HyenaDNA (sQTL discrimination)
HyenaDNA (sQTL discrimination); Feng et al. 2025 source-reported, task-scoped configuration.
Overview
HyenaDNA (sQTL discrimination); Feng et al. 2025 source-reported, task-scoped configuration.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
1 evaluation · 2 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: HyenaDNA (sQTL discrimination) | Protocol: Feng sQTL discrimination Dataset: Feng sQTL discrimination short-window dataset | 0.553 sQTL AUC AUC · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA sQTL discrimination evaluation Table 6, sQTL column, frozen embeddings + random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 6, AUC block, HyenaDNA row, sQTL column (deterministic XML extraction; rowspans resolved per data/omics/amp-coverage-20261007/feng/review-notes.md). |
| Configuration: HyenaDNA (sQTL discrimination) | Protocol: Feng sQTL discrimination Dataset: Feng sQTL discrimination short-window dataset | 0.202 sQTL Cohen’s d Cohen's d · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA sQTL discrimination evaluation Table 6, sQTL column, frozen embeddings + random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 6, Cohen’s d block, HyenaDNA row, sQTL column (deterministic XML extraction; rowspans resolved per data/omics/amp-coverage-20261007/feng/review-notes.md). Signed effect size; no universal desirable sign/direction is stated by the source. |
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Evidence
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Evidence table
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Sources and history
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Release 2026-10-07-1448159e6a81 · Record review: source checked
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Stable ID: amp-feng-20261007-config-qtl-sqtl-hyenadna
- method types
- foundation_model
- actual input bp
- Not reported
- foundation model eligible
- true
- head
- Supervised random forest fitted separately for this task
- head revision
- Not reported
- missing metadata
- version: Printed model name and input representation only; immutable checkpoint/head revision is unreported in the inspected primary text.
- output aggregation bp
- Not reported
- reported name
- HyenaDNA
- representation
- Alternate-minus-reference frozen representation
- task
- sQTL discrimination
- version
- Not reported
Related records
- configuration: HyenaDNA sQTL discrimination evaluation