Configuration

Caduceus-Ph, long sequence (eQTL discrimination)

Caduceus-Ph, long sequence (eQTL discrimination); Feng et al. 2025 source-reported, task-scoped configuration. Actual DNA input consumed by the model: 131072 bp (a crop of the dataset's generated window where smaller).

1 evaluation · 2 results

Overview

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 2 results. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Caduceus-Ph, long sequence (eQTL discrimination)	Protocol: Feng eQTL discrimination Dataset: Feng eQTL discrimination long-window dataset	0.626 eQTL AUC AUC · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus-Ph, long sequence eQTL discrimination evaluation Table 6, eQTL column, frozen embeddings + random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 6, AUC block, Caduceus-Ph, long sequence row, eQTL column (deterministic XML extraction; rowspans resolved per data/omics/amp-coverage-20261007/feng/review-notes.md).
Configuration: Caduceus-Ph, long sequence (eQTL discrimination)	Protocol: Feng eQTL discrimination Dataset: Feng eQTL discrimination long-window dataset	0.491 eQTL Cohen’s d Cohen's d · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus-Ph, long sequence eQTL discrimination evaluation Table 6, eQTL column, frozen embeddings + random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 6, Cohen’s d block, Caduceus-Ph, long sequence row, eQTL column (deterministic XML extraction; rowspans resolved per data/omics/amp-coverage-20261007/feng/review-notes.md). Signed effect size; no universal desirable sign/direction is stated by the source.

Source checking is not independent reproduction. Release 2026-10-07-1448159e6a81.

Use this model

How it works, versions and access

Strengths, limitations and unresolved questions

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

0 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
Property and statement	Original source and location	Review and provenance

No evidence rows match these filters. Choose another scope or clear the search.

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

View linked audit checks and correction history

Release 2026-10-07-1448159e6a81 · Record review: source checked

1 source records and release history

Benchmarking DNA foundation models for genomic and genetic tasks · Original source · PMC12663285.1

Download this release

Technical metadata and extraction receipts

Stable ID: amp-feng-20261007-config-qtl-eqtl-caduceus-ph-long-sequence

method types: foundation_model
actual input bp: 131072
foundation model eligible: true
head: Supervised random forest fitted separately for this task
head revision: Not reported
missing metadata: version: Printed model name and input representation only; immutable checkpoint/head revision is unreported in the inspected primary text.
output aggregation bp: Not reported
reported name: Caduceus-Ph, long sequence
representation: Alternate-minus-reference frozen representation
task: eQTL discrimination
version: Not reported

Related records

configuration: Caduceus-Ph, long sequence eQTL discrimination evaluation

Suggest a correction