version: Parabricks configurations (Samarakoon et al. 2025)
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field version Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.field version Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.source_locator Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.value Methods 2.3 states Parabricks version 4.3.0-1; Supplementary Table S4 calls 4.1.0-1 'the version implemented in our Parabricks pipeline' and 4.3.0-1 'the updated version', and its 4.1.0-1 values equal the Table S3 b.2 H100 values. The Table S4 introduction cites the Parabricks 4.3.1-1 release notes, and Discussion paragraph 10 says the comparison runs used DV.v4.3.1-1. Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value Methods 2.3 states Parabricks version 4.3.0-1; Supplementary Table S4 calls 4.1.0-1 'the version implemented in our Parabricks pipeline' and 4.3.0-1 'the updated version', and its 4.1.0-1 values equal the Table S3 b.2 H100 values. The Table S4 introduction cites the Parabricks 4.3.1-1 release notes, and Discussion paragraph 10 says the comparison runs used DV.v4.3.1-1. Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| description Descriptive fact transcribed from the pinned source. Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source. Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| Relationship: subject model-execution-20261009-config-samarakoon2025-parabricks-8xh100 Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject model-execution-20261009-config-samarakoon2025-parabricks-8xh100 Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
Sources and history
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
2 source records and release history
- Benchmarking accelerated next-generation sequencing analysis pipelines · Original source · Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML
- Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Original source · 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip
Technical metadata and extraction receipts
Stable ID: model-execution-20261009-claim-samarakoon2025-parabricks-version
- field
- version
- value
- Methods 2.3 states Parabricks version 4.3.0-1; Supplementary Table S4 calls 4.1.0-1 'the version implemented in our Parabricks pipeline' and 4.3.0-1 'the updated version', and its 4.1.0-1 values equal the Table S3 b.2 H100 values. The Table S4 introduction cites the Parabricks 4.3.1-1 release notes, and Discussion paragraph 10 says the comparison runs used DV.v4.3.1-1.
- source locator
- Methods 2.3; Supplementary Table S4 introduction and rows; Discussion paragraph 10
- review
- method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; reviewed at: 2026-10-09T20:46:48Z; note: Hand transcription from the article XML and supplementary PDF text. Independent review 2026-10-09: checked against the re-downloaded article XML and supplementary PDF text; wording corrected as listed in docs/reviews/use-cases/diagnostic-genomics-model-execution-2026-10-09.md.