ABC (DNALONGBENCH): facets.method_types
Facets: method types of ABC (DNALONGBENCH)
["conventional_pipeline"]
Correct the method type from supervised_machine_learning to conventional_pipeline (use-case baseline review 2026-10-12, table 2).
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field facets.method_types Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field facets.method_types Context-only references | MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC13232518 published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value ["supervised_machine_learning"] Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value ["supervised_machine_learning"] Context-only references | MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC13232518 published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Context-only references | MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC13232518 published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value ["conventional_pipeline"] Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value ["conventional_pipeline"] Context-only references | MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC13232518 published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Correct the method type from supervised_machine_learning to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Correct the method type from supervised_machine_learning to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Context-only references | MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC13232518 published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-23-5347695500ed · Record review: source checked
2 source records and release history
- DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Original source · Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML
- MPRA-informed modeling improves context-specific enhancer–gene regulatory interactions · Original source · PMC13232518 published article XML retrieved 2026-09-30
Technical metadata and extraction receipts
Stable ID: metadata-correction-tags-20261012-f8695fd337149b7221c4
- field
- facets.method_types
- previous value
- ["supervised_machine_learning"]
- value
- ["conventional_pipeline"]
- source locator
- DNALongBench Results: the expert model is ABC, "which incorporates DNase-seq, H3K27ac ChIP-seq data, and a Hi-C matrix"; MPRAbc Introduction: ABC is "a mathematical framework" combining activity and contact
- review
- method: source-hash-verification; automated-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the agent that prepared the corrections; no human review claimed; date: 2026-10-12; method note: Compared previous_value with origin/main and the store; re-retrieved the source (matches the source record) and read the passage in source_locator; checked the new value against the method-type definitions in data/vocab/method-type.ttl.; artifact sha256: 0d7db21f2a843dda3ba703c53cd0abad12c9c795cfbcf4fd1bdc6c4a863fe41b; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12627797/fullTextXML; note: Correct the method type from supervised_machine_learning to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Evidence from docs/reviews/use-cases/baselines-2026-10-12.md. Independent review 2026-10-12: approved. DNALongBench does not say ABC has no training step; the locator was corrected to what the source prints, with MPRAbc for the form of the ABC score. See docs/reviews/2026-10-12-method-type-corrections.md.
Related records
- subject: ABC (DNALONGBENCH)