scANVI: description
Description of scANVI
Semi-supervised variant of scVI, a deep generative model of single-cell transcriptomics, that uses existing cell-state annotations to label cells in new datasets.
Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field description Context-only references | Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Previous value scANVI cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value scANVI cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted. Context-only references | Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Source location qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Context-only references | Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Claimed value Semi-supervised variant of scVI, a deep generative model of single-cell transcriptomics, that uses existing cell-state annotations to label cells in new datasets. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Semi-supervised variant of scVI, a deep generative model of single-cell transcriptomics, that uses existing cell-state annotations to label cells in new datasets. Context-only references | Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- scFoundation primary supplement, Table4 · Original source · 10.1038/s41592-024-02305-7 publisher supplement
- Abstract: Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models (scANVI) · Original source · Europe PMC core record MED/33491336 (title and abstract), Molecular systems biology 2021
Technical metadata and extraction receipts
Stable ID: metadata-correction-c3da207ec15e800035a0
- areas
- single-cell
- field
- description
- previous value
- scANVI cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted.
- value
- Semi-supervised variant of scVI, a deep generative model of single-cell transcriptomics, that uses existing cell-state annotations to label cells in new datasets.
- source locator
- qa-descriptions-20261011-b-source-scanvi: abstractText ('scANVI, a semi-supervised variant of scVI designed to leverage existing cell state annotations'); coverage-source-scfoundation-supp: Supplementary Table 4
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json
Related records
- subject: scANVI