Evidence claim

AIDO-RNA: description

Description of AIDO-RNA

mRNABench evaluation of mature mRNA embeddings from AIDO.RNA, an RNA foundation model pretrained on 42 million non-coding RNA sequences at single-nucleotide resolution, with task scores quoted from prior work in MIMIC Table S11.

Replace a placeholder or provenance description with a sourced functional description (issue #88a). Historical releases retain the original value.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

21 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed field description Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Claimed field description Context-only references	Abstract: A Large-Scale Foundation Model for RNA Function and Structure Prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record PPR/PPR947686 (title and abstract), bioRxiv 2024 Retrieved: 2026-10-10T06:44:13Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8a90c7c124402e1e89d38f485050b43de832db0682c43fd494ee40d694dffcb6` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Previous value Prior mRNABench evaluated pipeline, quoted in MIMIC Table S11; not a new execution. Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Prior mRNABench evaluated pipeline, quoted in MIMIC Table S11; not a new execution. Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Previous value Prior mRNABench evaluated pipeline, quoted in MIMIC Table S11; not a new execution. Context-only references	Abstract: A Large-Scale Foundation Model for RNA Function and Structure Prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record PPR/PPR947686 (title and abstract), bioRxiv 2024 Retrieved: 2026-10-10T06:44:13Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8a90c7c124402e1e89d38f485050b43de832db0682c43fd494ee40d694dffcb6` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Source location coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Source location coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Context-only references	Abstract: A Large-Scale Foundation Model for RNA Function and Structure Prediction Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record PPR/PPR947686 (title and abstract), bioRxiv 2024 Retrieved: 2026-10-10T06:44:13Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8a90c7c124402e1e89d38f485050b43de832db0682c43fd494ee40d694dffcb6` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Claimed value mRNABench evaluation of mature mRNA embeddings from AIDO.RNA, an RNA foundation model pretrained on 42 million non-coding RNA sequences at single-nucleotide resolution, with task scores quoted from prior work in MIMIC Table S11. Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

3 source records and release history

MIMIC v1: Table S11 and Appendix D.3 · Original source · arXiv version 1
mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Abstract: A Large-Scale Foundation Model for RNA Function and Structure Prediction · Original source · Europe PMC core record PPR/PPR947686 (title and abstract), bioRxiv 2024

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Technical metadata and extraction receipts

Stable ID: metadata-correction-bdafb91cb6941c564b19

areas: rna-transcriptomes
field: description
previous value: Prior mRNABench evaluated pipeline, quoted in MIMIC Table S11; not a new execution.
value: mRNABench evaluation of mature mRNA embeddings from AIDO.RNA, an RNA foundation model pretrained on 42 million non-coding RNA sequences at single-nucleotide resolution, with task scores quoted from prior work in MIMIC Table S11.
source locator: coverage-source-mimic-2026-v1-html: Appendix D.3 and Table S11; expansion-p3-mrnabench-2025: abstract; qa-descriptions-20261010-source-aido-rna: abstract
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude research agent for issue #88a. Reviewer: separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-10; method note: Compared the description with the cited source text (abstract, README row, benchmark CSV header or full-text section) of re-downloaded artifacts, and previous_value with origin/main.; note: Description written from the cited source text; provenance text moved to attributes.source_locator. Independent review 2026-10-10: corrected. Removed '1.6-billion-parameter': the record does not identify the AIDO.RNA checkpoint quoted.

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subject: AIDO-RNA

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