Evidence claim

SPIN + ESM2-35M: description

Classifies proteins into family-specific functional classes with an ESM2-35M backbone whose first six encoder layers are frozen, adapting a question-answering architecture to locate a domain span and classify the selected region.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

14 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed field description Context-only references	Scaling the profile of life by function with SPIN Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558225+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `9701843e93bf7fa3ead71e19693fb07d483f1022379871adfb04486783722a9d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	Scaling the profile of life by function with SPIN Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558225+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `9701843e93bf7fa3ead71e19693fb07d483f1022379871adfb04486783722a9d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Context-only references	Scaling the profile of life by function with SPIN Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558225+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `9701843e93bf7fa3ead71e19693fb07d483f1022379871adfb04486783722a9d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Classifies proteins into family-specific functional classes with an ESM2-35M backbone whose first six encoder layers are frozen, adapting a question-answering architecture to locate a domain span and classify the selected region. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Classifies proteins into family-specific functional classes with an ESM2-35M backbone whose first six encoder layers are frozen, adapting a question-answering architecture to locate a domain span and classify the selected region. Context-only references	Scaling the profile of life by function with SPIN Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558225+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `9701843e93bf7fa3ead71e19693fb07d483f1022379871adfb04486783722a9d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	Scaling the profile of life by function with SPIN Original source ↗ Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558225+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `9701843e93bf7fa3ead71e19693fb07d483f1022379871adfb04486783722a9d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

Scaling the profile of life by function with SPIN · Original source · journal full text in PMC
facebookresearch/esm README.md · Original source · 2b369911bb5b4b0dda914521b9475cad1656b2ac

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Technical metadata and extraction receipts

Stable ID: metadata-correction-6e776887757906c63771

areas: proteins-complexes
field: description
previous value: Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers.
value: Classifies proteins into family-specific functional classes with an ESM2-35M backbone whose first six encoder layers are frozen, adapting a question-answering architecture to locate a domain span and classify the selected region.
source locator: Reviewed profile (2026-09-16): summary at 3 Results/3.4 Analysis of the SH3 protein family and representational augmentation across clades (paragraph 4); 3 Results/3.3 SPIN on thioredoxin, a widespread protein family (paragraph 1); architecture fact at 2 Materials and methods/2.1 SPIN architecture (paragraph 1); 2 Materials and methods/2.1 SPIN architecture (paragraph 7); description text also read at Abstract; 2 Materials and methods/2.1 SPIN architecture (layer freezing)
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked all 11 scTab and MPRabc method descriptions against PMC11298532 and PMC13232518, and Lazypipe-nt, scaLR, CATHe2, DiffDock-NMDN, PC-mer and Hi-Enhancer against their papers; all match. The other pipeline descriptions are consistent with their pinned papers.; receipt: data/omics/qa-descriptions-20261011-c/review.json

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subject: SPIN + ESM2-35M

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