Evidence claim

ESM2_AMPS: description

Description of ESM2_AMPS

Predicts binary protein-protein interactions from ESM-2 representations of sequence segments fused by a transformer encoder; AMPS is the segment-feature variant of the framework.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

14 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record Retrieved: 2026-09-16T10:33:58.625Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8e7ad6efb72ca28d73037cdf465b0e62f99cd6d0ee4ca9eaf96a4c48da22fd6c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed field description Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record Retrieved: 2026-09-16T10:33:58.625Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8e7ad6efb72ca28d73037cdf465b0e62f99cd6d0ee4ca9eaf96a4c48da22fd6c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Context-only references	ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record Retrieved: 2026-09-16T10:33:58.625Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8e7ad6efb72ca28d73037cdf465b0e62f99cd6d0ee4ca9eaf96a4c48da22fd6c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Predicts binary protein-protein interactions from ESM-2 representations of sequence segments fused by a transformer encoder; AMPS is the segment-feature variant of the framework. Context-only references	ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record Retrieved: 2026-09-16T10:33:58.625Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `8e7ad6efb72ca28d73037cdf465b0e62f99cd6d0ee4ca9eaf96a4c48da22fd6c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Predicts binary protein-protein interactions from ESM-2 representations of sequence segments fused by a transformer encoder; AMPS is the segment-feature variant of the framework. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record Retrieved: 2026-09-16T10:33:58.625Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8e7ad6efb72ca28d73037cdf465b0e62f99cd6d0ee4ca9eaf96a4c48da22fd6c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Original source · version of record
facebookresearch/esm README.md · Original source · 2b369911bb5b4b0dda914521b9475cad1656b2ac

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Technical metadata and extraction receipts

Stable ID: metadata-correction-6066cc303cc697c281fa

areas: molecular-interactions
field: description
previous value: Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers.
value: Predicts binary protein-protein interactions from ESM-2 representations of sequence segments fused by a transformer encoder; AMPS is the segment-feature variant of the framework.
source locator: Reviewed profile (2026-09-16): summary at Methods/Construction of dual models based on feature integration (paragraph 3); Results/Attention mechanism reveal protein–protein interaction mechanism (paragraph 1); architecture fact at Methods/Interpretability analysis utilizing attention mechanisms (paragraph 1); Methods/Construction of dual models based on feature integration (paragraph 3); description text also read at Abstract
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked all 11 scTab and MPRabc method descriptions against PMC11298532 and PMC13232518, and Lazypipe-nt, scaLR, CATHe2, DiffDock-NMDN, PC-mer and Hi-Enhancer against their papers; all match. The other pipeline descriptions are consistent with their pinned papers.; receipt: data/omics/qa-descriptions-20261011-c/review.json

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subject: ESM2_AMPS

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