Evidence claim

ProteinMPNN: description

ProteinMPNN designs amino-acid sequences for a supplied protein backbone.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

42 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	ProteinMPNN official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	dauparas/ProteinMPNN: protein_mpnn_utils.py Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 Retrieved: 2026-09-16T19:46:18.948060+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `74c8f9b7553422a7a0bbd705874844ee103c8926c2c96f154a87e0b824071e1b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	proteinmpnn-supp: Publisher supplementary archive Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T20:43:11.978593+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `002269144962619673b7b187bdda20bd250e5f3cfd9f72a529eac53e7a1ac082` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	dauparas/ProteinMPNN: training/README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 Retrieved: 2026-09-16T19:46:18.948060+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `7cbe5f3f1cef53f1954b15710317d9755b7b7b3febace4758190850f12e23029` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	proteinmpnn: Journal full-text XML Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T19:53:03.193318+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `3e9042dc0ac2837e07654a43e74abcbcdd7dc4cf017fa81e2d9869b1fdb3c52e` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	dauparas/ProteinMPNN: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 Retrieved: 2026-09-16T19:46:18.948060+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `772ebe52d2ba5100a28a888910c6f0c9fd4ded1d1372e3d89f6f1c48707e0365` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	ProteinMPNN official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	dauparas/ProteinMPNN: protein_mpnn_utils.py Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 Retrieved: 2026-09-16T19:46:18.948060+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `74c8f9b7553422a7a0bbd705874844ee103c8926c2c96f154a87e0b824071e1b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	proteinmpnn-supp: Publisher supplementary archive Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T20:43:11.978593+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `002269144962619673b7b187bdda20bd250e5f3cfd9f72a529eac53e7a1ac082` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	dauparas/ProteinMPNN: training/README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 Retrieved: 2026-09-16T19:46:18.948060+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `7cbe5f3f1cef53f1954b15710317d9755b7b7b3febace4758190850f12e23029` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

6 source records and release history

ProteinMPNN official resource · Original source · Not reported
dauparas/ProteinMPNN: README.md · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
dauparas/ProteinMPNN: training/README.md · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
dauparas/ProteinMPNN: protein_mpnn_utils.py · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
proteinmpnn: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
proteinmpnn-supp: Publisher supplementary archive · Original source · Retrieved page snapshot; no immutable publisher revision supplied

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Technical metadata and extraction receipts

Stable ID: metadata-correction-5ac13669b0c0eb600447

areas: proteins-complexes
method types: specialist
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: ProteinMPNN designs amino-acid sequences for a supplied protein backbone.
source locator: Reviewed profile summary (2026-09-16): evidence-official-ea568a52ea3ab476db6a, evidence-official-7b6fdf915d9c6950ad0d, evidence-official-019aff235ae2c3cf29d6, evidence-official-92b0ae57a020cbc40fe7, evidence-official-0b8003691827eb09b0a4: ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

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subject: ProteinMPNN

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