Evidence claim

ARSENAL+ChromBPNet: description

Supervised chromatin-accessibility and regulatory-variant predictor in which embeddings from ARSENAL, a short-context masked DNA language model trained with motif-discovery regularisation, are added to ChromBPNet inputs.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

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Inspect claims, sources and review details

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7 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Supervised chromatin-accessibility and regulatory-variant predictor in which embeddings from ARSENAL, a short-context masked DNA language model trained with motif-discovery regularisation, are added to ChromBPNet inputs. Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Relationship: subject reported-model-ee1ae8162c7d67 Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:reported-model-ee1ae8162c7d67` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Name ARSENAL+ChromBPNet: description Context-only references	Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization Original source ↗ Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract Version: preprint version in PMC Retrieved: 2026-09-16T10:41:06Z	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `4a264956e47fc633aaff6573aac368dc691dd5de709b27c7421c078608ff542a` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Original source · preprint version in PMC

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Technical metadata and extraction receipts

Stable ID: metadata-correction-462a476a6c9e74f65996

areas: dna-genomes
field: description
previous value: Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers.
value: Supervised chromatin-accessibility and regulatory-variant predictor in which embeddings from ARSENAL, a short-context masked DNA language model trained with motif-discovery regularisation, are added to ChromBPNet inputs.
source locator: Reviewed profile (2026-09-16): summary at Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 2); Results/ARSENAL embeddings improve supervised sequence models of chromatin accessibility (paragraph 1); architecture fact at Abstract (paragraph 1); Results/The ARSENAL model: targeted pretraining with motif discovery regularization (paragraph 2); description text also read at Abstract
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked all 11 scTab and MPRabc method descriptions against PMC11298532 and PMC13232518, and Lazypipe-nt, scaLR, CATHe2, DiffDock-NMDN, PC-mer and Hi-Enhancer against their papers; all match. The other pipeline descriptions are consistent with their pinned papers.; receipt: data/omics/qa-descriptions-20261011-c/review.json

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subject: ARSENAL+ChromBPNet

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