Evidence claim

scGPT: description

Description of scGPT

scGPT learns representations of single-cell molecular measurements and supports task-specific adaptation.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

28 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	scGPT official resource Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	bowang-lab/scGPT: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T19:46:18.594429+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	bowang-lab/scGPT: scgpt/model/model.py Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T19:46:18.594429+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `4ae77618cc6f12a7d1f6d946fee3f7bd5c56f3e9e103073394a590ceba5a35ed` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	scgpt-may2023: Primary paper PDF Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version posted 1 May 2023; re-inspected existing local research artifact Retrieved: 2026-09-16T20:21:23.046376+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `4ef64d2b3431812df07c4b3e428950644ff264ec5728267c2e4692588f557419` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	scGPT official resource Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	bowang-lab/scGPT: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T19:46:18.594429+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	bowang-lab/scGPT: scgpt/model/model.py Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T19:46:18.594429+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `4ae77618cc6f12a7d1f6d946fee3f7bd5c56f3e9e103073394a590ceba5a35ed` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	scgpt-may2023: Primary paper PDF Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version posted 1 May 2023; re-inspected existing local research artifact Retrieved: 2026-09-16T20:21:23.046376+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `4ef64d2b3431812df07c4b3e428950644ff264ec5728267c2e4692588f557419` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Source location Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Context-only references	scGPT official resource Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Source location Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Context-only references	bowang-lab/scGPT: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T19:46:18.594429+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

4 source records and release history

scGPT official resource · Original source · Not reported
bowang-lab/scGPT: README.md · Original source · cebd6fae655b9c585a4807daa3ac31bb764f06b4
bowang-lab/scGPT: scgpt/model/model.py · Original source · cebd6fae655b9c585a4807daa3ac31bb764f06b4
scgpt-may2023: Primary paper PDF · Original source · bioRxiv version posted 1 May 2023; re-inspected existing local research artifact

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Technical metadata and extraction receipts

Stable ID: metadata-correction-381b359b21e1b713218c

areas: cells-tissues
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: scGPT learns representations of single-cell molecular measurements and supports task-specific adaptation.
source locator: Reviewed profile summary (2026-09-23): evidence-official-0e4dac85aa0e0ff1d4b2, evidence-official-d8e2d4f2e752370b6565, evidence-official-efa6ec9d886a21534a20: May 2023 scGPT preprint Sections 4.1–4.3 and 4.8; current scgpt/model/model.py and README pretrained model table; README.md: Pretrained scGPT Model Zoo, whole-human row
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

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subject: scGPT

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