True DE prevalence, K562, within-cell-line test set (Table 1)
True de prevalence of K562 essential-gene Perturb-seq, 40% test perturbations (Sun et al. 2026)
3.54%
Share of perturbation-gene pairs that are DE in the observed test data, printed for reference beside the predicted DE proportions.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field true_de_prevalence Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
| Source location Table 1, row 'True DE prevalence', column 'K562' Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
| Claimed value 3.54% Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
| Description Share of perturbation-gene pairs that are DE in the observed test data, printed for reference beside the predicted DE proportions. Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
| Relationship: subject lit-cells-networks-20261011-sun2026de-data-k562 Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
| Name True DE prevalence, K562, within-cell-line test set (Table 1) Context-only references | Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models Table 1, row 'True DE prevalence', column 'K562' Version: bioRxiv preprint version 1, posted 2026-07-24 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of one download; bioRxiv serves slightly different PDF bytes per download, so the gzip copy in artifacts/ is the reference. |
Sources and history
Release 2026-10-23-5347695500ed · Record review: source checked
1 source record and release history
- Beyond Expression Prediction: Benchmarking Differential Expression Classification in Single-Cell Perturbation Models · Original source · bioRxiv preprint version 1, posted 2026-07-24
Technical metadata and extraction receipts
Stable ID: lit-cells-networks-20261011-sun2026de-claim-t1-true-de-prevalence-k562
- field
- true_de_prevalence
- value
- 3.54%
- source locator
- Table 1, row 'True DE prevalence', column 'K562'
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Transcribed from the pinned source by the extraction script.; reviewer: claude; reviewer note: Claude review agent reviewer-cn-1, independent of the extractor lit-cells-networks; no human review claimed; date: 2026-10-12; artifact sha256: fa1c6a6345c45e14b9c373dfa8aff12633ae646feece1cfa3899c3ed61f6cfdf; retrieval url: https://www.biorxiv.org/content/10.64898/2026.07.20.739620v1.full.pdf; note: Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration, protocol and dataset checked by the reviewer's own parse of all Tables 1-4 cells and a hand check of 48 values against the rendered pages.