Protein sequence recovery specialist
Candidate reference for task-specific evaluation; no score is implied.
Evaluation results
0 evaluations · 0 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
No evaluations linked in this release.
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Applicable tests and references
Applicability is distinct from a completed evaluation.
- ProteinBench · Proposed association
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
56 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.applicability proposed Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.applicability proposed Context-only references | dauparas/ProteinMPNN: protein_mpnn_utils.py No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | proteinmpnn-supp: Publisher supplementary archive No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | dauparas/ProteinMPNN: training/README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | proteinmpnn: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | dauparas/ProteinMPNN: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | dauparas/ProteinMPNN official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type learned-specialist Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type learned-specialist Context-only references | dauparas/ProteinMPNN: protein_mpnn_utils.py No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.baseline_type learned-specialist Context-only references | proteinmpnn-supp: Publisher supplementary archive No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: discovered
7 source records and release history
- dauparas/ProteinMPNN official source · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
- dauparas/ProteinMPNN: README.md · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
- dauparas/ProteinMPNN: training/README.md · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
- dauparas/ProteinMPNN: protein_mpnn_utils.py · Original source · 8907e6671bfbfc92303b5f79c4b5e6ce47cdef57
- proteinmpnn: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
- proteinmpnn-supp: Publisher supplementary archive · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: discovery-baseline-protein-sequence-recovery-specialist
- areas
- protein-structure
- applicability
- proposed
- baseline type
- learned-specialist
- missing metadata
- implementation version: unextracted; protocol applicability: unextracted
- requirements
- Pinned backbone, checkpoint and sampling temperature.
- scope note
- Source documents method or task context; proposed applicability requires protocol review.
- entity classification
- review date: 2026-09-17; rationale: This record defines a proposed comparison/reference role. Its learned-specialist value remains a baseline-type facet; the underlying method/model/library is represented by a linked entity where verified. A baseline role is not itself a measured result or a new scientific architecture.; source ids: evidence-discovery-final-proteinbench; evidence-official-ea568a52ea3ab476db6a; evidence-official-7b6fdf915d9c6950ad0d; evidence-official-019aff235ae2c3cf29d6; evidence-official-92b0ae57a020cbc40fe7; evidence-official-0b8003691827eb09b0a4; source locator: Task definitions; ATLAS evaluation; antibody-design setup; result tables | ProteinMPNN paper: main-text model development; training/README.md: multi-chain training set, list.csv and cluster manifests; protein_mpnn_utils.py: ProteinMPNN; Supplementary Materials: Methods for training multi-chain models / Training data; ambiguities: Applicability is proposed. This classification does not certify that the baseline was run, was matched to every linked protocol, or constitutes an experimental ceiling.
Related records
- applicable to: ProteinBench
- model: ProteinMPNN