Biological models

138 model records in release 2026-10-10-7fcc3e48a123 (gzip). Showing 121–138; page 6 of 6.

Evaluated configurations, methods and pipelines are listed separately. Names alone do not establish equivalent models or checkpoints.

• SweetNet

  Glycans

  SweetNet predicts glycan properties and produces learned representations from glycan graphs.

• TAPE Bepler

  Protein function

  The TAPE Bepler comparison uses a protein representation that combines bidirectional language modelling with supervised structural pretraining.

• TAPE LSTM

  Protein function

  The TAPE LSTM baseline represents protein sequences using recurrent networks that read residues in both directions.

• TAPE ResNet

  Protein function

  The TAPE ResNet baseline represents protein sequences using residual convolutional blocks before a task-specific prediction head.

• TAPE Transformer

  Protein function

  The TAPE Transformer learns contextual protein representations using masked-residue pretraining and a task-specific prediction head.

• TAPE Unirep

  Protein function

  The TAPE UniRep baseline uses a multiplicative recurrent network to represent protein sequences for downstream tasks.

• TranceptEVE

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• Tranception

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• TREDNet

  DNA and genomes

  Two-phase CNN for enhancer prediction and variant prioritisation (Manzo et al. 2025 Results 2.3 and reference 18), from the group of the Manzo et al. senior author.

• UCE (Universal Cell Embeddings)

  Cells and tissues

  Single-cell foundation model producing cell embeddings from protein-embedded gene tokens (Table 1).

• Unirep

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• Unirep evotuned

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• VenusREM

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• VESPA

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• VespaG

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• VESPAl

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• Wavenet

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

• xTrimoPGLM

  Proteins and complexes

  Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.

This index reflects a dated catalogue, not an exhaustive census. Source checking does not mean independent reproduction; compare results only under compatible protocols, datasets and metrics.