BioML-bench task open-problems-spatial-genes
Identify spatially variable genes in mouse cortex Slide-seqV2 data.
No reviewed evaluations are linked here in this release. See the sources below.
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- BioML-bench: Evaluation of AI Agents for End-to-End Biomedical ML · Original source · bioRxiv 2025.09.01.673319 version 3, posted 2025-09-28 (versions 1 and 2 posted 2025-09-04 and 2025-09-07)
- science-machine/biomlbench repository at commit 673f3d8 · Original source · Git commit 673f3d8d3462fc6cdcbbd9695fba612b9332ca65 (2025-09-14, head of main at retrieval); README title 'BioML-bench (v0.1-alpha)'
Technical metadata and extraction receipts
Stable ID: lit-agents-20261013-biomlbench-task-open-problems-spatial-genes
- areas
- single-cell
- contexts
- research
- task
- Identify spatially variable genes in mouse cortex Slide-seqV2 data.
- task type
- Single Cell Omics
- dataset
- Adapted from Open Problems; simulated Slide-seqV2 mouse cortex; grader kendall-correlation
- version
- BioML-bench v0.1-alpha; repository task ID manual/open-problems-spatially-variable-genes
- source locator
- Table 3, row 'open-problems-spatial-genes'; repository experiments/biomlbench_v0.1a.txt and task config.yaml
- scope note
- Adapted from an Open Problems task with BioML-bench's own data preparation; not linked to the Open Problems suite because the split and data differ from the Open Problems benchmark.