rewirebio.iobenchmarks
Source

Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Primary source retrieved and hashed for the patient-RNA splicing use-case pass.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-ba02f2f4a36e
Property and statementOriginal source and locationReview and provenance
attributes.artifact_sha256
2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_sha256

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.artifact_url
https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12547740/fullTextXML
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_url

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.doi
10.1016/j.xhgg.2025.100521
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.doi

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.licence
CC-BY-4.0
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.licence

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.limitations
1 values
  • Results ('Additional splicing prediction tools can help predict variant effect on splicing', paragraph 2) prints SQUIRLS AUPRC 0.888; Data S1 Table S3 D13 stores 0.8815 (SPiP is 0.8886). The same section cites Table S3 for thresholded TPR, F1 and NPV, which are in Table S4. Both are prose slips; the stored values come from the tables.
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.limitations

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.media_type
application/xml
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.media_type

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.publication_status
peer_reviewed
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.publication_status

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.retrieved_at
2026-10-09T20:30:41Z
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.retrieved_at

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.url
https://doi.org/10.1016/j.xhgg.2025.100521
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.url

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Source metadata
Routine RNA-based analysis of potential splicing variants facilitates genomic diagnostics and reveals limitations of in silico prediction tools

Original source ↗

No field-specific location recorded

Version: HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
Retrieved: 2026-10-09T20:30:41Z

catalogued

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-09-ba02f2f4a36e · Record review: source checked

0 source records and release history

No supporting source is linked yet.

Read original source

Download this release (gzip)
Technical metadata and extraction receipts

Stable ID: rna-splicing-20261009-source-drost2025

areas
dna-genomes
contexts
clinical_research
url
https://doi.org/10.1016/j.xhgg.2025.100521
artifact url
https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12547740/fullTextXML
version
HGG Advances 7(1):100521, published online 2025-09-22; PMC12547740 full-text XML
retrieved at
2026-10-09T20:30:41Z
artifact sha256
2a2e970526e4348d505d26356b830d96da9e32688c4de84841ac8137b62d5d32
doi
10.1016/j.xhgg.2025.100521
publication status
peer_reviewed
licence
CC-BY-4.0
media type
application/xml
limitations
Results ('Additional splicing prediction tools can help predict variant effect on splicing', paragraph 2) prints SQUIRLS AUPRC 0.888; Data S1 Table S3 D13 stores 0.8815 (SPiP is 0.8886). The same section cites Table S3 for thresholded TPR, F1 and NPV, which are in Table S4. Both are prose slips; the stored values come from the tables.
Related records

    Suggest a correction