Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples
Primary source retrieved and hashed for the RNA pathogen-detection use-case pass.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
21 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.artifact_sha256 735ce2e42ae5fe6f5a198bdc14fd2e92ef27fc1d3734d2137a3c86d24480c718 Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.artifact_url https://www.medrxiv.org/content/early/2021/05/08/2021.05.04.21256618.source.xml Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.doi 10.1101/2021.05.04.21256618 Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.licence CC-BY-NC-ND-4.0 Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
attributes.limitations3 values
| Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.media_type application/xml Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.publication_status preprint Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.retrieved_at 2026-10-09T20:15:27Z Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Licence from the JATS <license> element Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.url https://doi.org/10.1101/2021.05.04.21256618 Source metadata | Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples No field-specific location recorded Version: medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Technical metadata and extraction receipts
Stable ID: rna-pathogen-20261009-source-devries2021
- areas
- microbes-communities
- contexts
- clinical_research
- url
- https://doi.org/10.1101/2021.05.04.21256618
- artifact url
- https://www.medrxiv.org/content/early/2021/05/08/2021.05.04.21256618.source.xml
- version
- medRxiv 2021.05.04.21256618 version 1 (2021-05-08), JATS XML; published as J Clin Virol 141:104908 (doi:10.1016/j.jcv.2021.104908)
- retrieved at
- 2026-10-09T20:15:27Z
- artifact sha256
- 735ce2e42ae5fe6f5a198bdc14fd2e92ef27fc1d3734d2137a3c86d24480c718
- doi
- 10.1101/2021.05.04.21256618
- publication status
- preprint
- licence
- CC-BY-NC-ND-4.0
- media type
- application/xml
- venue
- medRxiv
- year
- 2021
- source locator
- Licence from the JATS <license> element
- limitations
- Preprint version. The published version (PMC7615111, CC BY) could not be retrieved: Europe PMC full-text XML returned HTTP 500 twice and the publisher, Europe PMC PDF, UCL and Leiden repository copies returned HTTP 403 or an access-blocked page.; Tables 1 and 2 of the preprint are images; they were not transcribed.; The Abstract gives the lowest sample-level sensitivity as 80% (10/13); 10/13 is 76.9%, which Results ('77%') and Supplementary Table 2 print. 80% is the lowest hit-level value (12/15, Supplementary Table 4).