Source

Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings

Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 · Peer-reviewed

Evidence

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Evidence table

Inspect claims, sources and review details

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26 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-cbb3da59bc08
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0 Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID%3A40662791+AND+SRC%3AMED&format=json&resultType=core Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Doi 10.1093/bioinformatics/btaf188 Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Hash scope SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Licence CC-BY-4.0 Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Media type application/json Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Publication status peer_reviewed Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Retrieved at 2026-10-10T06:44:13Z Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
attributes.review.artifact_sha256 05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0 Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.artifact_sha256` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact
Review: date 2026-10-10 Source metadata	Abstract: DNABERT-S: pioneering species differentiation with species-aware DNA embeddings Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025 Retrieved: 2026-10-10T06:44:13Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence. Inspected artifact

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Release 2026-10-10-cbb3da59bc08 · Record review: source checked

Source text retrieved and hashed for the issue #88a functional-description fix.

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Technical metadata and extraction receipts

Stable ID: qa-descriptions-20261010-source-dnabert-s

url: https://doi.org/10.1093/bioinformatics/btaf188
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID%3A40662791+AND+SRC%3AMED&format=json&resultType=core
version: Europe PMC core record MED/40662791 (title and abstract), Bioinformatics (Oxford, England) 2025
retrieved at: 2026-10-10T06:44:13Z
artifact sha256: 05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0
publication status: peer_reviewed
media type: application/json
source locator: abstractText
doi: 10.1093/bioinformatics/btaf188
licence: CC-BY-4.0
hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. The response is not byte-stable: on 2026-10-10 a second retrieval of 10 of these 31 records differed only in JSON key order and parsed to identical content. The title and abstractText fields are the evidence.
review: method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-10; artifact sha256: 05d8e8c6f7821f4cddda7dd44349d8fab9fea1c91a3250ff7ae36b170e43ebf0; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID%3A40662791+AND+SRC%3AMED&format=json&resultType=core; method note: Re-downloaded the artifact, compared its SHA-256 with the pin and read the title and abstract (or the cited section).; note: Re-downloaded on 2026-10-10; the bytes match artifact_sha256. The record identifies the original paper (title, DOI or arXiv identifier) and the text supports the descriptions that cite it.

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