0.144 recall
smith2023-mst1r-exon11-mpsa-conspliceml-intron-noncanon recall
- Tested configuration
- ConSpliceML (Smith and Kitzman 2023)
- Protocol
- MST1R (RON) exon 11 saturation MPSA: transcriptome-normalised sensitivity at a 10% background call rate (Smith and Kitzman Table S2)
- Dataset
- MST1R (RON) exon 11 saturation MPSA (Smith and Kitzman benchmark set)
- Procedure
- splicing-follow-up-20261009-protocol-smith2023-mst1r-exon11-mpsa-tn10
- Evaluation
- ConSpliceML on MST1R (RON) exon 11 saturation MPSA
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedBenchmarking splice variant prediction algorithms using massively parallel splicing assays; Smith and Kitzman 2023, Additional file 3 (Table S2) · Additional file 3 sheet 'Sensitivity 10% SDV', cell F33; row Intron_NonCanon_ConSpliceML, column RON
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- No split
- Adaptation
- None; published models or precomputed scores
- Scoring implementation
- Sensitivity at the tool threshold calling 10% of the 500,000-SNV background set
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.143939393939393 Individual claims | Benchmarking splice variant prediction algorithms using massively parallel splicing assays Additional file 3 sheet 'Sensitivity 10% SDV', cell F33; row Intron_NonCanon_ConSpliceML, column RON Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 24:294, published 2023-12-21; PMC10734170 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsDeterministic parse of the pinned XLSX cell XML (extract/extract_splicing_follow_up.py) with sheet name, dataset headers and row labels asserted; printed_value is the shortest round-trip decimal of the stored double, raw_xml_value keeps the stored text. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
| Reported result 0.143939393939393 Individual claims | Smith and Kitzman 2023, Additional file 3 (Table S2) Additional file 3 sheet 'Sensitivity 10% SDV', cell F33; row Intron_NonCanon_ConSpliceML, column RON Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2023_3144_MOESM3_ESM.xlsx inside the Europe PMC supplementaryFiles zip for PMC10734170 | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsDeterministic parse of the pinned XLSX cell XML (extract/extract_splicing_follow_up.py) with sheet name, dataset headers and row labels asserted; printed_value is the shortest round-trip decimal of the stored double, raw_xml_value keeps the stored text. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: SHA-256 of the MOESM3 xlsx member (zip SHA-256 e06758da73eda5d4ba9c61361514ed2d84573bf50df5bf8036102389e019d525; Europe PMC assembles the zip per request). Extraction artifact SHA-256: |
Sources and history
Release 2026-10-10-6e93f504adfc · Record review: source checked
2 source records and release history
- Benchmarking splice variant prediction algorithms using massively parallel splicing assays · Original source · Genome Biology 24:294, published 2023-12-21; PMC10734170 full-text XML
- Smith and Kitzman 2023, Additional file 3 (Table S2) · Original source · 13059_2023_3144_MOESM3_ESM.xlsx inside the Europe PMC supplementaryFiles zip for PMC10734170
Technical metadata and extraction receipts
Stable ID: splicing-follow-up-20261009-result-smith2023-mst1r-exon11-mpsa-conspliceml-intron-noncanon
- metric
- recall
- metric direction
- higher
- unit
- fraction
- printed value
- 0.143939393939393
- numeric value
- 0.143939393939393
- source locator
- Additional file 3 sheet 'Sensitivity 10% SDV', cell F33; row Intron_NonCanon_ConSpliceML, column RON
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the supplementary zip and matched the SHA-256 of member 13059_2023_3144_MOESM3_ESM.xlsx. Read the cell with a separate stdlib OOXML reader written for this review (shared strings, raw cell text; number format General); the extractor's scripts were not imported or run. Built each cell's identity from the dataset header and the tool and variant-class row label, and checked raw text, printed value, numeric value, metric, qualifier, unit, direction and the linked evaluation's configuration, protocol and dataset.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: c5ed8dc1488f87a1aff766c0ed4c8b3faab148259ca6e6f28e729b9a57a700fa; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10734170/supplementaryFiles; note: Deterministic parse of the pinned XLSX cell XML (extract/extract_splicing_follow_up.py) with sheet name, dataset headers and row labels asserted; printed_value is the shortest round-trip decimal of the stored double, raw_xml_value keeps the stored text. Independent review 2026-10-09: value and identity match the source.
- missing metadata
- uncertainty: reason: unreported
- metric qualifier
- transcriptome-normalised threshold calling 10% of background SNVs; intronic variants excluding essential splice sites
- raw xml value
- 0.14393939393939301