0.976 f1-score
wang2020-vote-4callers-min3-dream-set1-snv f1-score (snv only)
- Tested configuration
- Majority vote, 4 SNV callers, at least 3 agree (Wang et al. 2020)
- Protocol
- DREAM synthetic set 1 somatic SNVs, WGS (Wang et al. 2020 Table S1)
- Dataset
- ICGC-TCGA DREAM synthetic set 1 (WGS)
- Procedure
- somatic-20261009-protocol-wang2020-dream-set1-snv
- Evaluation
- 4callers(voting>=3) on DREAM Set1 SNVs (Wang et al. 2020)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Author-reported evaluation · source checkedSomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach; Wang et al. 2020, Supplementary Tables (somatic caller performance) · Supplementary Tables workbook sheet 'S1 WGS SNVs', G13; dataset 'DREAM Set1'; caller '4callers(voting>=3)'; column 'F1'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Single tumour-normal pair
- Adaptation
- Not reported
- Scoring implementation
- DREAM challenge evaluator.py
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.976 Individual claims | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Supplementary Tables workbook sheet 'S1 WGS SNVs', G13; dataset 'DREAM Set1'; caller '4callers(voting>=3)'; column 'F1' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 author reported Audit detailsExtracted by deterministic parse of the pinned XLSX cell XML (extract/extract_somatic.py with extract/rawxlsx.py), with the sheet title, column headers, dataset labels and configuration labels asserted. printed_value is the shortest round-trip decimal of the stored double; raw_xml_value keeps the stored text. Spreadsheet display formatting was not applied. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
| Reported result 0.976 Individual claims | Wang et al. 2020, Supplementary Tables (somatic caller performance) Supplementary Tables workbook sheet 'S1 WGS SNVs', G13; dataset 'DREAM Set1'; caller '4callers(voting>=3)'; column 'F1' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 author reported Audit detailsExtracted by deterministic parse of the pinned XLSX cell XML (extract/extract_somatic.py with extract/rawxlsx.py), with the sheet title, column headers, dataset labels and configuration labels asserted. printed_value is the shortest round-trip decimal of the stored double; raw_xml_value keeps the stored text. Spreadsheet display formatting was not applied. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
2 source records and release history
- SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach · Original source · Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML
- Wang et al. 2020, Supplementary Tables (somatic caller performance) · Original source · 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher
Technical metadata and extraction receipts
Stable ID: somatic-20261009-result-wang2020-vote-4callers-min3-dream-set1-snv-f1-score
- metric
- f1-score
- metric direction
- higher
- unit
- fraction
- metric qualifier
- snv only
- printed value
- 0.976
- numeric value
- 0.976
- raw xml value
- 0.97599999999999998
- source locator
- Supplementary Tables workbook sheet 'S1 WGS SNVs', G13; dataset 'DREAM Set1'; caller '4callers(voting>=3)'; column 'F1'
- missing metadata
- uncertainty: reason: unreported
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the workbook and matched its SHA-256. Read the cell with a separate stdlib OOXML parser written for this review; the extractor's scripts were not imported or run. Checked raw cell text, printed and numeric value (shortest round-trip decimal), metric, qualifier, unit and direction from the sheet and column headers, dataset block and caller label, the linked evaluation's configuration and protocol, and the protocol's truth count against column B and article Table 1. F1 was recomputed from the printed precision and recall (largest difference 0.0012, from three-decimal rounding).; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: b9b5c68c7f78ff16863f64bb414394fd7b7dcd600795532aab30e39cd8d39c81; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41598-020-69772-8/MediaObjects/41598_2020_69772_MOESM3_ESM.xlsx; note: Extracted by deterministic parse of the pinned XLSX cell XML (extract/extract_somatic.py with extract/rawxlsx.py), with the sheet title, column headers, dataset labels and configuration labels asserted. printed_value is the shortest round-trip decimal of the stored double; raw_xml_value keeps the stored text. Spreadsheet display formatting was not applied. Pending independent review. Independent review 2026-10-09: value and identity match the source.