rewirebio.iobenchmarks
Result

−1.26 z-score

segarracasas2025-outrider-event-12 z-score

Tested configuration
OUTRIDER v1.20.1 (Segarra-Casas et al.)
Protocol
OUTRIDER expression z-score at 16 known pathogenic splicing events in muscle RNA-seq (Segarra-Casas et al. Table 2)
Dataset
Segarra-Casas et al. skeletal-muscle RNA-seq cohort, 16 pathogenic splicing events
Procedure
rna-splicing-20261009-protocol-segarracasas2025-outrider-zscore
Evaluation
OUTRIDER z-score at 16 known pathogenic muscle splicing events
Coverage
Not reported scored / Not reported eligible
Uncertainty
Not reported by the source
Evidence
Independent external evaluation · source checkedTranslating Muscle RNAseq Into the Clinic for the Diagnosis of Muscle Diseases · Table 2 row 12 (case 61*), column 'Aberrant expression (OUTRIDER z-score)'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split
No split
Adaptation
Not reported
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-7b8f80935f90
Property and statementOriginal source and locationReview and provenance
Reported result
−1.26
Individual claims
Translating Muscle RNAseq Into the Clinic for the Diagnosis of Muscle Diseases

Original source ↗

Table 2 row 12 (case 61*), column 'Aberrant expression (OUTRIDER z-score)'

Version: Annals of Clinical and Translational Neurology 12(7):1465, published online 2025-05-25; PMC12257123 full-text XML
Retrieved: 2026-10-09T20:33:50Z

source checked

["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09

independent paper

Audit details

Deterministic parse of the pinned article XML table (extract/extract_rna_splicing.py) with caption, column headers and case labels asserted; printed text kept exactly, including Unicode minus and footnote text. Pending independent review. Independent review 2026-10-09: value and identity match the source.

Field: attributes.printed_value

Source artifact SHA-256: 6e61a917c80d08357fe7316ad84f5cb84ac457fcce4cb1d3b5bf866046e2095d

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Extraction artifact SHA-256: 6e61a917c80d08357fe7316ad84f5cb84ac457fcce4cb1d3b5bf866046e2095d

Extraction artifact

Sources and history

Release 2026-10-10-7b8f80935f90 · Record review: source checked

1 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: rna-splicing-20261009-result-segarracasas2025-outrider-event-12

metric
z-score
metric direction
unknown
unit
unitless
printed value
−1.26
numeric value
-1.26
source locator
Table 2 row 12 (case 61*), column 'Aberrant expression (OUTRIDER z-score)'
missing metadata
uncertainty: reason: unreported
review
method: source-hash-verification; deterministic-table-parse; independent-cell-check; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: 6e61a917c80d08357fe7316ad84f5cb84ac457fcce4cb1d3b5bf866046e2095d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12257123/fullTextXML; method note: Re-downloaded the artifact and matched its SHA-256. Read Segarra-Casas Table 2 (article XML) with a separate reader written for this review (the extractor's scripts were not run). Checked printed and numeric value, locator, metric, unit and direction, and the evaluation's configuration, protocol and dataset. Checked the bold markup of the cell against printed_source_cell.; note: Deterministic parse of the pinned article XML table (extract/extract_rna_splicing.py) with caption, column headers and case labels asserted; printed text kept exactly, including Unicode minus and footnote text. Pending independent review. Independent review 2026-10-09: value and identity match the source.
metric qualifier
case 61*, COL6A1(NM_001848.3):c.859‐10T>A, Multiple aberrant transcripts
unit detail
Expression z-score of the affected gene; bold marks a correct outlier call (footnote)
printed source cell
not bold
Related records

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