Result

0.828 AUC

Word2Vec + Transformer + MLP: AUC on Human RNA 2OMe sites, five-fold cross-validation

Tested configuration: Word2Vec + Transformer + MLP
Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction)
Dataset: human RNA 2OMe sites
Procedure: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set.
Evaluation: Word2Vec + Transformer + MLP: Human RNA 2OMe sites, five-fold cross-validation
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 6: Human RNA 2OMe sites, five-fold cross-validation AUC

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set.
Adaptation: Paper-specific predictor; checkpoint not specified
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction)

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
Reported result 0.828 Individual claims	2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Original source ↗ Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 6: Human RNA 2OMe sites, five-fold cross-validation AUC Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.332Z	source checked Primary-table transcription and separate automated source review · 2026-09-17 author reported Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `54fe4db6f35c03d0d4f3ef4da720eb26a832199372c56d0956609ff07af750ee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Original source · journal full text in PMC

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Technical metadata and extraction receipts

Stable ID: paper-result-9ce02fe7f446cb3868

areas: rna-transcriptomes
tasks: human RNA 2-prime-O-methylation site prediction
printed value: 0.828
numeric value: 0.828
metric: AUC
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 6: Human RNA 2OMe sites, five-fold cross-validation AUC
source occurrences: source id: 2ome-lm-2025; locator: Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 6: Human RNA 2OMe sites, five-fold cross-validation AUC
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: Word2Vec + Transformer + MLP: Human RNA 2OMe sites, five-fold cross-validation

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