0.53 MCC
iPro70-FMWin: MCC on E. coli sigma70 independent promoter test
- Tested configuration
- iPro70-FMWin
- Protocol
- E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)
- Dataset
- E. coli sigma70 promoter dataset
- Procedure
- Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- Evaluation
- iPro70-FMWin: E. coli sigma70 independent promoter test
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Result quoted from another source · source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row iPro70-FMWin, column MCC; XML row6 column3
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- Adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.53 Individual claims | ProkBERT family: genomic language models for microbiome applications Table 3, row iPro70-FMWin, column MCC; XML row6 column3 Version: PMC10810988.1 | source checked Primary-table transcription and separate automated source review · 2026-09-17 paper compilation Audit detailsSource checked does not mean experimentally reproduced. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
Technical metadata and extraction receipts
Stable ID: paper-result-4735c3c4f977af0fce
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- printed value
- 0.53
- numeric value
- 0.53
- metric
- MCC
- metric direction
- higher
- unit
- dimensionless
- uncertainty
- Not reported
- eligible count
- Not reported
- scored count
- Not reported
- reported population
- Not reported
- source locator
- Table 3, row iPro70-FMWin, column MCC; XML row6 column3
- source occurrences
- source id: part2-prokbert-2024; locator: Table 3, row iPro70-FMWin, column MCC; XML row6 column3
- review
- method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
- missing metadata
- scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported