Result

GDT ts of trRosettaRNA 1.0 (Ludaic and Elofsson 2026 RNA benchmark run) on Ludaic and Elofsson 2026 Monomeric RNA hard set

0.369 GDT ts

Methods

Tested configuration: trRosettaRNA 1.0 (Ludaic and Elofsson 2026 RNA benchmark run)
Protocol: Ludaic and Elofsson 2026 Monomeric RNA hard set, mean GDT-TS
Dataset: Ludaic and Elofsson 2026 Monomeric RNA hard set
Procedure: Ludaic and Elofsson 2026 Monomeric RNA hard set, mean GDT-TS
Evaluation: trRosettaRNA on Monomeric RNA hard set (GDT-TS)
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedLimits of deep-learning-based RNA prediction methods · Table 3, row 'trRosettaRNA', column 'GDT-TS'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Hard (structurally dissimilar to training data)
Adaptation: Default settings, no retraining; top-ranked of five models
Scoring implementation: RNAdvisor

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Reported result 0.369 Individual claims	Limits of deep-learning-based RNA prediction methods Original source ↗ Table 3, row 'trRosettaRNA', column 'GDT-TS' Version: Nucleic Acids Research 2026, gkag813 (issue date 2026-08-01); PMC13501138 full-text XML Retrieved: 2026-10-11T21:27:03Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-12 independent paper Audit details Extraction: Parsed the <td> cells of the pinned PMC XML table with extract/extract_rna3d.py; row label and column header taken from the same table. Table 3 body row 10. Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration and protocol checked. Field: `attributes.printed_value` Source artifact SHA-256: `02043b4a3edbb62101f6abbca56c896a63fa5c7dc0c3956c58164daff015ad1f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `02043b4a3edbb62101f6abbca56c896a63fa5c7dc0c3956c58164daff015ad1f` Extraction artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

Limits of deep-learning-based RNA prediction methods · Original source · Nucleic Acids Research 2026, gkag813 (issue date 2026-08-01); PMC13501138 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-rna-20261011-rna3d-result-trrosettarna-monomer-hard-mean-gdt-ts

metric: gdt-ts
metric direction: higher
unit: unitless
printed value: 0.369
source locator: Table 3, row 'trRosettaRNA', column 'GDT-TS'
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-fetched the PMC XML and the supplementary PDF and matched their SHA-256. An independent parse of Tables 2-5 and Supplementary Tables S6, S7 and S15 (pdftotext -layout and -raw) matched all 216 printed and numeric values and locators; 42 cells were also checked by hand. Success rates in S6-S7 were recomputed from S2-S5 as a consistency check, not as a derivation.; reviewer: claude; reviewer note: Claude review agent reviewer-ro-1, independent of the extractor lit-rna-otheromics; no human review claimed; date: 2026-10-12; artifact sha256: 02043b4a3edbb62101f6abbca56c896a63fa5c7dc0c3956c58164daff015ad1f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13501138/fullTextXML; note: Extraction: Parsed the <td> cells of the pinned PMC XML table with extract/extract_rna3d.py; row label and column header taken from the same table. Table 3 body row 10. Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration and protocol checked.
numeric value: 0.369
missing metadata: uncertainty: reason: unreported

Related records

evaluation: trRosettaRNA on Monomeric RNA hard set (GDT-TS)

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