Result

Scmbench integration accuracy (mean of MAP, NMI, ASW and ARI) of scMDC (SCMBench) on Ma-2020-batch-53 (SCMBench)

0.539 Scmbench integration accuracy (mean of MAP, NMI, ASW and ARI)

Evidence concern: excluded from comparisons

Sheet 'unpaired_inte_overall' has no header for column H. Each H cell is the formula =AVERAGE(Bn:Gn), the mean of the dataset cells with values. Rows with a blank Yao cell (bindSC, scMoMaT, scGPT_zero, Pamona, scFoundation, Geneformer) average five datasets and the other rows six, so column H values are not comparable across all rows.SCMBench Supplementary Data 2 (integration results) · Supplementary Data 2, sheet 'unpaired_inte_overall', row 1 and column H

'FM-scVI' is a different foundation model per dataset ('the best-performing foundation model combined with scVI, which varies across datasets', Fig. 2 legend), so its rows do not describe one fixed configuration.SCMBench Supplementary Data 2 (integration results) · Article Fig. 2 legend; Supplementary Data 2 'FM-scVI' rows

In sheet 'paired_inte_overall' the scGPT row is scored on 10x-Multiome-Pbmc10k only; its Overall cell G20 (=AVERAGE(B20:F20)) is that single value, not a five-dataset mean, so it is not comparable with the other Overall values.SCMBench Supplementary Data 2 (integration results) · Supplementary Data 2, sheet 'paired_inte_overall', cell G20

Methods

Tested configuration: scMDC (SCMBench)
Protocol: SCMBench paired RNA-ATAC integration accuracy
Dataset subset: Ma-2020-batch-53 (SCMBench)
Procedure: SCMBench paired RNA-ATAC integration accuracy
Evaluation: scMDC on SCMBench paired integration, Ma-2020-batch-53
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedSCMBench: benchmarking domain-specific and foundation models for single-cell multi-omics data integration; SCMBench Supplementary Data 2 (integration results) · Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53')

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Per dataset or batch as in Supplementary Data 2; whether batch splits use the 2,500-cell samples is not stated
Adaptation: Not reported
Scoring implementation: SCMBench integration accuracy (MAP, NMI, ASW, ARI)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Reported result 0.53895 Individual claims	SCMBench: benchmarking domain-specific and foundation models for single-cell multi-omics data integration Original source ↗ Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Published article, Nature Communications 2026 (PMC13342640.1) Retrieved: 2026-10-11T21:38:51Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-12 independent paper Audit details Extraction: Read the cell from the sheet XML of the pinned workbook with extract_scmbench.py (stored value 0.53895000000000004, General format); row labels and headers asserted. Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53'). Independent review 2026-10-12: raw XML value, numeric value, printed value, locator, metric, unit, direction and linked configuration, protocol and dataset checked by the reviewer's own read of the sheet XML and a hand check of 40 values against the cell grid. Corrections from the review applied by the extractor as listed in review.md. Field: `attributes.printed_value` Source artifact SHA-256: `7aa2dbf1fc26bd602bf26e52c1061f91358a1c6cb389f57edc0ebfb0edc64f57` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `77582bcc906fed343de12c2b2ed7443e94f5d11bf93b7f3862a37c5099015443` Extraction artifact
Reported result 0.53895 Individual claims	SCMBench Supplementary Data 2 (integration results) Original source ↗ Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Data 2 (MOESM4) of the published article Retrieved: 2026-10-11T21:38:51Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-12 independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Extraction: Read the cell from the sheet XML of the pinned workbook with extract_scmbench.py (stored value 0.53895000000000004, General format); row labels and headers asserted. Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53'). Independent review 2026-10-12: raw XML value, numeric value, printed value, locator, metric, unit, direction and linked configuration, protocol and dataset checked by the reviewer's own read of the sheet XML and a hand check of 40 values against the cell grid. Corrections from the review applied by the extractor as listed in review.md. Field: `attributes.printed_value` Source artifact SHA-256: `77582bcc906fed343de12c2b2ed7443e94f5d11bf93b7f3862a37c5099015443` Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: `77582bcc906fed343de12c2b2ed7443e94f5d11bf93b7f3862a37c5099015443` Extraction artifact

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

2 source records and release history

SCMBench: benchmarking domain-specific and foundation models for single-cell multi-omics data integration · Original source · Published article, Nature Communications 2026 (PMC13342640.1)
SCMBench Supplementary Data 2 (integration results) · Original source · Supplementary Data 2 (MOESM4) of the published article

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Technical metadata and extraction receipts

Stable ID: lit-cells-networks-20261011-scmbench-result-paired-ma-2020-batch-53-scmdc

metric: scmbench-integration-accuracy
metric direction: higher
unit: unitless
printed value: 0.53895
source locator: Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53')
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Read the cell from the sheet XML of the pinned workbook with extract_scmbench.py (stored value 0.53895000000000004, General format); row labels and headers asserted. Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53'); reviewer: claude; reviewer note: Claude review agent reviewer-cn-2, independent of the extractor lit-cells-networks; no human review claimed; date: 2026-10-12; artifact sha256: 77582bcc906fed343de12c2b2ed7443e94f5d11bf93b7f3862a37c5099015443; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-026-72570-x/MediaObjects/41467_2026_72570_MOESM4_ESM.xlsx; note: Extraction: Read the cell from the sheet XML of the pinned workbook with extract_scmbench.py (stored value 0.53895000000000004, General format); row labels and headers asserted. Supplementary Data 2, sheet 'paired_inte_overall', cell D3 (row 'scMDC', column 'Ma-2020-batch-53'). Independent review 2026-10-12: raw XML value, numeric value, printed value, locator, metric, unit, direction and linked configuration, protocol and dataset checked by the reviewer's own read of the sheet XML and a hand check of 40 values against the cell grid. Corrections from the review applied by the extractor as listed in review.md.
numeric value: 0.53895000000000004
metric qualifier: mean of MAP, NMI, ASW and ARI
missing metadata: uncertainty: reason: unreported
raw xml value: 0.53895000000000004
workbook number format: General
source cells: 'paired_inte_overall'!D3
printed value basis: Stored number of a General-format cell at 15 significant digits (raw XML value kept in raw_xml_value); visible spreadsheet precision depends on column width.

Related records

evaluation: scMDC on SCMBench paired integration, Ma-2020-batch-53

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