Result

0.91 precision at 50% recall

scGen · precision at 50% recall · stimulated immune PBMC

Tested configuration: scGen
Task: differentially expressed gene identification
Dataset: stimulated immune PBMC
Procedure: In-silico perturbation assessment with precision sampled at fixed 50% recall
Evaluation: scGen: differentially expressed gene identification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedAUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes · Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: CD14+Mono
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: differentially expressed gene identification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.91 Individual claims	AUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes Original source ↗ Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column Version: PMC archival version PMC12400816.1 Retrieved: 2026-09-16T10:41:06Z	source checked independent ai table review · 2026-09-16T10:41:06Z independent paper Audit details CD14+Mono scGen; precision at50%recall. Transcription verified; experimental claims not independently reproduced. Field: `attributes.printed_value` Claim: claim-lit-b4-016 Source artifact SHA-256: `2715709d94f84744afa32cafdcaa72efd206d63af8c60afe7619b2cb90108b6b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `2715709d94f84744afa32cafdcaa72efd206d63af8c60afe7619b2cb90108b6b` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

AUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes · Original source · PMC archival version PMC12400816.1

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Technical metadata and extraction receipts

Stable ID: lit-b4-016

areas: cells-tissues
tasks: differentially expressed gene identification
printed value: 0.91
numeric value: 0.91
metric: precision at 50% recall
metric direction: unknown
unit: fraction
uncertainty: Not reported
source locator: Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column
review: method: independent_ai_table_review; reviewer: Codex primary curator table review; reviewed at: 2026-09-16T10:41:06Z; notes: CD14+Mono scGen; precision at50%recall. Transcription verified; experimental claims not independently reproduced.; evidence: 0.91; artifact sha256: 2715709d94f84744afa32cafdcaa72efd206d63af8c60afe7619b2cb90108b6b; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12400816/fullTextXML
legacy id: lit-b4-016
legacy row: id: lit-b4-016; paper id: insilico-perturbation-auprc-2025; domain id: cells-tissues; task: differentially expressed gene identification; model: scGen; model version: Not reported; dataset: stimulated immune PBMC; dataset version: Not reported; split: CD14+Mono; metric: precision at 50% recall; value: 0.91; unit: fraction; uncertainty: Not reported; protocol: In-silico perturbation assessment with precision sampled at fixed 50% recall; source locator: Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12400816/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:37:05Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: scGen: differentially expressed gene identification
subject: Reported precision at 50% recall for scGen

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