AUROC of scGPT + residual geometry on immune tissue
0.677 AUROC
Methods
- Tested pipeline
- scGPT + residual geometry
- Task
- gene-regulatory signal prediction
- Dataset
- immune tissue
- Procedure
- Asymmetric extraction, PCA-64 centered cosine geometry added to scGPT baseline
- Evaluation
- scGPT + residual geometry: gene-regulatory signal prediction
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not yet extracted
- Evidence
- Author-reported evaluation · source checkedResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Printed value 0.677 Individual claims | Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues Table 4, Immune row, scGPT > +geom AUROC column Version: version of record | source checked ["ai-assisted-source-review"] · 2026-09-16T10:41:06Z author reported Audit detailsImmune row, scGPT +geom (second numeric column), not Geneformer or delta. Transcription verified; experimental claims not independently reproduced. Field: Claim: claim-lit-b4-013 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b4-013
- areas
- cells-tissues
- tasks
- gene-regulatory signal prediction
- printed value
- 0.677
- numeric value
- 0.677
- metric
- auroc
- metric direction
- unknown
- unit
- unitless
- source locator
- Table 4, Immune row, scGPT > +geom AUROC column
- review
- method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:41:06Z; evidence: 0.677; artifact sha256: 77546faec51cfb5c78b73c5943f940c4e0097d130b1ddde4ab8287b507b36df6; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13418759/fullTextXML; method note: independent; table-level review; reviewer note: role: primary curator table review; note: Immune row, scGPT +geom (second numeric column), not Geneformer or delta. Transcription verified; experimental claims not independently reproduced.
- legacy id
- lit-b4-013
- missing metadata
- dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted