Result

0.677 AUROC

scGPT + residual geometry · AUROC · immune tissue

Tested pipeline: scGPT + residual geometry
Task: gene-regulatory signal prediction
Dataset: immune tissue
Procedure: Asymmetric extraction, PCA-64 centered cosine geometry added to scGPT baseline
Evaluation: scGPT + residual geometry: gene-regulatory signal prediction
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checkedResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

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Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: gene-regulatory signal prediction

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.677 Individual claims	Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues Original source ↗ Table 4, Immune row, scGPT > +geom AUROC column Version: version of record Retrieved: 2026-09-16T10:41:06Z	source checked independent ai table review · 2026-09-16T10:41:06Z author reported Audit details Immune row, scGPT +geom (second numeric column), not Geneformer or delta. Transcription verified; experimental claims not independently reproduced. Field: `attributes.printed_value` Claim: claim-lit-b4-013 Source artifact SHA-256: `77546faec51cfb5c78b73c5943f940c4e0097d130b1ddde4ab8287b507b36df6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `77546faec51cfb5c78b73c5943f940c4e0097d130b1ddde4ab8287b507b36df6` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b4-013

areas: cells-tissues
tasks: gene-regulatory signal prediction
printed value: 0.677
numeric value: 0.677
metric: AUROC
metric direction: unknown
unit: fraction
uncertainty: Not reported
source locator: Table 4, Immune row, scGPT > +geom AUROC column
review: method: independent_ai_table_review; reviewer: Codex primary curator table review; reviewed at: 2026-09-16T10:41:06Z; notes: Immune row, scGPT +geom (second numeric column), not Geneformer or delta. Transcription verified; experimental claims not independently reproduced.; evidence: 0.677; artifact sha256: 77546faec51cfb5c78b73c5943f940c4e0097d130b1ddde4ab8287b507b36df6; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13418759/fullTextXML
legacy id: lit-b4-013
legacy row: id: lit-b4-013; paper id: single-cell-residual-geometry-2026; domain id: cells-tissues; task: gene-regulatory signal prediction; model: scGPT + residual geometry; model version: Not reported; dataset: immune tissue; dataset version: Not reported; split: Not reported; metric: AUROC; value: 0.677; unit: fraction; uncertainty: Not reported; protocol: Asymmetric extraction, PCA-64 centered cosine geometry added to scGPT baseline; source locator: Table 4, Immune row, scGPT > +geom AUROC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13418759/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:37:05Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: scGPT + residual geometry: gene-regulatory signal prediction
subject: Reported AUROC for scGPT + residual geometry

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