Result

0.861 Pearson R

TOPBP (Complex) · Pearson R · PDBbind core v2016

Tested configuration: TOPBP (Complex)
Task: Protein–ligand binding affinity prediction
Dataset: PDBbind core v2016
Procedure: Source table compiles a previously published comparator; protocol equivalence is not established.
Evaluation: TOPBP (Complex): Protein–ligand binding affinity prediction
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Result quoted from another source · source checkedDEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity · Table 2, TOPBP (Complex) row, PDBbind v2016 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Protein–ligand binding affinity prediction

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.861 Individual claims	DEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity Original source ↗ Table 2, TOPBP (Complex) row, PDBbind v2016 column Version: PMC archival version PMC8274096.1 Retrieved: 2026-09-16T10:33:55.586Z	source checked independent ai table review · 2026-09-16T10:44:03.429669+00:00 paper compilation Audit details TOPBP Complex reference row; PDBbind v2016 core-set Pearson correlation. Third-party comparator with cited reference; do not infer an independent new run from table inclusion. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-043 Source artifact SHA-256: `5a7620c18d0622561004e1e25b5cfaf7399e93df3547eeefdd4cf6d300bb8aba` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `5a7620c18d0622561004e1e25b5cfaf7399e93df3547eeefdd4cf6d300bb8aba` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

DEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity · Original source · PMC archival version PMC8274096.1

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Technical metadata and extraction receipts

Stable ID: lit-b3-043

areas: molecular-interactions
tasks: Protein–ligand binding affinity prediction
printed value: 0.861
numeric value: 0.861
metric: Pearson R
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 2, TOPBP (Complex) row, PDBbind v2016 column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.429669+00:00; notes: TOPBP Complex reference row; PDBbind v2016 core-set Pearson correlation. Third-party comparator with cited reference; do not infer an independent new run from table inclusion. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "table2-11779322211030364", "row_cells": ["TOPBP (Complex) 31", "0.808", "0.861"], "selected_cell_zero_based": 2, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.861</td>", "caption": "Pearson correlations coefficient on PDBbind core set."}; artifact sha256: 5a7620c18d0622561004e1e25b5cfaf7399e93df3547eeefdd4cf6d300bb8aba; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC8274096/fullTextXML
legacy id: lit-b3-043
legacy row: id: lit-b3-043; paper id: deelig-2021; domain id: molecular-interactions; task: Protein–ligand binding affinity prediction; model: TOPBP (Complex); model version: Not reported; dataset: PDBbind core v2016; dataset version: v2016; split: Not reported; metric: Pearson R; value: 0.861; unit: unitless; uncertainty: Not reported; protocol: Source table compiles a previously published comparator; protocol equivalence is not established.; source locator: Table 2, TOPBP (Complex) row, PDBbind v2016 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8274096/; evaluation origin: paper_compilation; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: TOPBP (Complex): Protein–ligand binding affinity prediction
subject: Reported Pearson R for TOPBP (Complex)

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