Result

89.8 Genus-level F1

GTDB-Tk · Genus-level F1 · Real mock community MAGs

Tested configuration: GTDB-Tk
Task: Mock-community MAG taxonomy classification
Dataset: Real mock community MAGs
Procedure: Genus classification of the same MAG set.
Evaluation: GTDB-Tk: Mock-community MAG taxonomy classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedkMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes · Table 2, F1-score % row, Genus Gtk column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Mock-community MAG taxonomy classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 89.80 Individual claims	kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes Original source ↗ Table 2, F1-score % row, Genus Gtk column Version: PMC archival version PMC11695915.1 Retrieved: 2026-09-16T10:44:03.417367+00:00	source checked independent ai table review · 2026-09-16T10:44:03.418914+00:00 independent paper Audit details Real mock sequencing table, F1-score percentage row; Genus is final three-column block, selecting kMS or Gtk rather than Species/Strain. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-030 Source artifact SHA-256: `4584e93ea035c1170b8756a0a52cbe99fe72e70bd09b5f1dee639ee104f78247` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `4584e93ea035c1170b8756a0a52cbe99fe72e70bd09b5f1dee639ee104f78247` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes · Original source · PMC archival version PMC11695915.1

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Technical metadata and extraction receipts

Stable ID: lit-b3-030

areas: microbes-communities
tasks: Mock-community MAG taxonomy classification
printed value: 89.80
numeric value: 89.80
metric: Genus-level F1
metric direction: unknown
unit: %
uncertainty: Not reported
source locator: Table 2, F1-score % row, Genus Gtk column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.418914+00:00; notes: Real mock sequencing table, F1-score percentage row; Genus is final three-column block, selecting kMS or Gtk rather than Species/Strain. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "TB2", "row_cells": ["F1-score %", "28.13", "85.42", "86.24", "87.18", "87.72", "95.83", "89.80", "94.85"], "selected_cell_zero_based": 7, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">89.80</td>", "caption": "Classification performance metrics measured on the real mock sequencing data."}; artifact sha256: 4584e93ea035c1170b8756a0a52cbe99fe72e70bd09b5f1dee639ee104f78247; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11695915/fullTextXML
legacy id: lit-b3-030
legacy row: id: lit-b3-030; paper id: kmetashot-2025; domain id: microbes-communities; task: Mock-community MAG taxonomy classification; model: GTDB-Tk; model version: Not reported; dataset: Real mock community MAGs; dataset version: Not reported; split: Not reported; metric: Genus-level F1; value: 89.80; unit: %; uncertainty: Not reported; protocol: Genus classification of the same MAG set.; source locator: Table 2, F1-score % row, Genus Gtk column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11695915/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: GTDB-Tk: Mock-community MAG taxonomy classification
subject: Reported Genus-level F1 for GTDB-Tk

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