Result

0.627 Genus-level F1

Kraken2 · Genus-level F1 · Simulated viral metagenome

Tested configuration: Kraken2
Task: Simulated metagenome virus-taxon retrieval
Dataset: Simulated viral metagenome
Procedure: Genus-rank viral taxon retrieval.
Evaluation: Kraken2: Simulated metagenome virus-taxon retrieval
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Kraken2 / Genus row, F column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Simulated metagenome virus-taxon retrieval

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.627 Individual claims	Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types Original source ↗ Table 1, Kraken2 / Genus row, F column Version: version of record Retrieved: 2026-09-16T10:44:03.412605+00:00	source checked independent ai table review · 2026-09-16T10:44:03.413635+00:00 independent paper Audit details First Genus block selected using rank row span, not Species. Final F column is F score, not precision or recall. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-022 Source artifact SHA-256: `77842d8e4f6b419e331ab5a01fdf8f9eb8604f259425d79602be896aad3d0ad1` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `77842d8e4f6b419e331ab5a01fdf8f9eb8604f259425d79602be896aad3d0ad1` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b3-022

areas: microbes-communities
tasks: Simulated metagenome virus-taxon retrieval
printed value: 0.627
numeric value: 0.627
metric: Genus-level F1
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 1, Kraken2 / Genus row, F column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.413635+00:00; notes: First Genus block selected using rank row span, not Species. Final F column is F score, not precision or recall. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "veaa091-T1", "row_cells": ["Kraken2", "21", "1", "24", "0.955", "0.467", "0.627"], "selected_cell_zero_based": -1, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.627</td>", "caption": "Accessing accuracy of virus taxon retrieval by different tools."}; artifact sha256: 77842d8e4f6b419e331ab5a01fdf8f9eb8604f259425d79602be896aad3d0ad1; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7772471/fullTextXML
legacy id: lit-b3-022
legacy row: id: lit-b3-022; paper id: lazypipe-2020; domain id: microbes-communities; task: Simulated metagenome virus-taxon retrieval; model: Kraken2; model version: Not reported; dataset: Simulated viral metagenome; dataset version: Not reported; split: Not reported; metric: Genus-level F1; value: 0.627; unit: unitless; uncertainty: Not reported; protocol: Genus-rank viral taxon retrieval.; source locator: Table 1, Kraken2 / Genus row, F column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC7772471/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Kraken2: Simulated metagenome virus-taxon retrieval
subject: Reported Genus-level F1 for Kraken2

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