Result

0.54 Adjusted Rand Index

GenePT-w · Adjusted Rand Index · Aorta single-cell dataset

Tested configuration: GenePT-w
Task: Cell-type structure in frozen embeddings
Dataset: Aorta single-cell dataset
Procedure: k-means on pretrained cell embeddings; agreement with original cell-type labels.
Evaluation: GenePT-w: Cell-type structure in frozen embeddings
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checkedGenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Table 2, Aorta / Cell type row, GenePT-w ARI column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

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Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: Cell-type structure in frozen embeddings

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.54 Individual claims	GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT Original source ↗ Table 2, Aorta / Cell type row, GenePT-w ARI column Version: PMC archival version PMC10614824.2 Retrieved: 2026-09-16T10:44:03.399274+00:00	source checked independent ai table review · 2026-09-16T10:44:03.399274+00:00 author reported Audit details First Cell type row belongs to Aorta, not preceding Phenotype row or later organs. ARI is first in each three-metric method block, not AMI/ASW. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-011 Source artifact SHA-256: `230a2ec55458d9243eaeeebf3244df7409eb02d47f4b809ee56a06dcb6fdd047` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `230a2ec55458d9243eaeeebf3244df7409eb02d47f4b809ee56a06dcb6fdd047` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Original source · PMC archival version PMC10614824.2

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Technical metadata and extraction receipts

Stable ID: lit-b3-011

areas: cells-tissues
tasks: Cell-type structure in frozen embeddings
printed value: 0.54
numeric value: 0.54
metric: Adjusted Rand Index
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 2, Aorta / Cell type row, GenePT-w ARI column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.399274+00:00; notes: First Cell type row belongs to Aorta, not preceding Phenotype row or later organs. ARI is first in each three-metric method block, not AMI/ASW. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "T6", "row_cells": ["", "Cell type", "0.21", "0.31", "−0.04", "0.47", "0.64", "0.18", "0.54", "0.60", "0.03", "0.31", "0.47", "0.04"], "selected_cell_zero_based": 8, "selected_cell_xml": "<td align=\"center\" valign=\"top\" rowspan=\"1\" colspan=\"1\">\n<bold>0.54</bold>\n</td>", "caption": "Assessing the Association Between Different Latent Cell Representations and Biological Annotations.This analysis involves datasets representing cells from circulatory systems (Aorta and Artery), bone tissues (Bones, Myeloid), the Pancreas, and immune cells collected from healthy individuals and patients with Multiple Sclerosis. We utilized pretrained Geneformer and scGPT embeddings for this task. The Adjusted Rand Index (ARI) and Adjusted Mutual Information (AMI) were computed to compare the labels derived from k-means clustering with the true annotations of the original samples (higher values indicate better alignment); the Average Silhouette Width (ASW) was calculated using the true annotations of original samples to assess the cohesion and separation of the clusters."}; artifact sha256: 230a2ec55458d9243eaeeebf3244df7409eb02d47f4b809ee56a06dcb6fdd047; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10614824/fullTextXML
legacy id: lit-b3-011
legacy row: id: lit-b3-011; paper id: genept-2024; domain id: cells-tissues; task: Cell-type structure in frozen embeddings; model: GenePT-w; model version: Not reported; dataset: Aorta single-cell dataset; dataset version: Not reported; split: Not reported; metric: Adjusted Rand Index; value: 0.54; unit: unitless; uncertainty: Not reported; protocol: k-means on pretrained cell embeddings; agreement with original cell-type labels.; source locator: Table 2, Aorta / Cell type row, GenePT-w ARI column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10614824/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: GenePT-w: Cell-type structure in frozen embeddings
subject: Reported Adjusted Rand Index for GenePT-w

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