Result

F1 of Mouse-Geneformer on Human thymus scRNA-seq

48.6% F1

Methods

Tested configuration: Mouse-Geneformer
Task: Human thymus cell-type classification
Dataset: Human thymus scRNA-seq
Related family profiles: Geneformer
Procedure: Ortholog-based gene conversion; zero-shot mouse model on human cells.
Evaluation: Mouse-Geneformer: Human thymus cell-type classification
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not yet extracted
Evidence: Author-reported evaluation · source checkedMouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility · Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Printed value 48.57 Individual claims	Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility Original source ↗ Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column Version: version of record Retrieved: 2026-09-16T10:44:03.392488+00:00	source checked ["ai-assisted-source-review"] · 2026-09-16T10:44:03.392488+00:00 author reported Audit details h/ Thymus row, four human cell types; zero-shot model blocks use Acc then F1, not fine-tuned scores. Ortholog-based conversion evaluated, not mouse cell annotation. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-003 Source artifact SHA-256: `ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d` Extraction artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b3-003

areas: cells-tissues
tasks: Human thymus cell-type classification
printed value: 48.57
numeric value: 48.57
metric: f1-score
metric direction: unknown
unit: percent
source locator: Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column
review: method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:44:03.392488+00:00; evidence: {"table_xml_id": "pgen.1011420.t004", "row_cells": ["h/ Thymus", "4", "82.74", "48.57", "95.59", "87.81", "87.27", "74.48", "95.44", "87.79", "92.04", "82.37"], "selected_cell_zero_based": 3, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">48.57</td>", "caption": "Human cell type classification using mouse-Geneformer via ortholog-based gene name conversion, compared to native human models (human-Geneformer and scGPT)."}; artifact sha256: ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11964219/fullTextXML; method note: independent; table-level review; reviewer note: role: omics research agent; independent source-table review; not human review; note: h/ Thymus row, four human cell types; zero-shot model blocks use Acc then F1, not fine-tuned scores. Ortholog-based conversion evaluated, not mouse cell annotation. Source check verifies central value and table context, not experiment reproduction or all metadata.
legacy id: lit-b3-003
missing metadata: dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted

Related records

evaluation: Mouse-Geneformer: Human thymus cell-type classification
subject: Reported F1 for Mouse-Geneformer

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