Result

48.6 F1

Mouse-Geneformer · F1 · Human thymus scRNA-seq

Tested configuration: Mouse-Geneformer
Task: Human thymus cell-type classification
Dataset: Human thymus scRNA-seq
Related family profiles: Geneformer
Procedure: Ortholog-based gene conversion; zero-shot mouse model on human cells.
Evaluation: Mouse-Geneformer: Human thymus cell-type classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checkedMouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility · Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: Human thymus cell-type classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 48.57 Individual claims	Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility Original source ↗ Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column Version: version of record Retrieved: 2026-09-16T10:44:03.392488+00:00	source checked independent ai table review · 2026-09-16T10:44:03.392488+00:00 author reported Audit details h/ Thymus row, four human cell types; zero-shot model blocks use Acc then F1, not fine-tuned scores. Ortholog-based conversion evaluated, not mouse cell annotation. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-003 Source artifact SHA-256: `ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b3-003

areas: cells-tissues
tasks: Human thymus cell-type classification
printed value: 48.57
numeric value: 48.57
metric: F1
metric direction: unknown
unit: %
uncertainty: Not reported
source locator: Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.392488+00:00; notes: h/ Thymus row, four human cell types; zero-shot model blocks use Acc then F1, not fine-tuned scores. Ortholog-based conversion evaluated, not mouse cell annotation. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "pgen.1011420.t004", "row_cells": ["h/ Thymus", "4", "82.74", "48.57", "95.59", "87.81", "87.27", "74.48", "95.44", "87.79", "92.04", "82.37"], "selected_cell_zero_based": 3, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">48.57</td>", "caption": "Human cell type classification using mouse-Geneformer via ortholog-based gene name conversion, compared to native human models (human-Geneformer and scGPT)."}; artifact sha256: ef6c68f5c9b47c2f89598ddf647f05b72e4155e8b33609ebff23936a84bbd41d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11964219/fullTextXML
legacy id: lit-b3-003
legacy row: id: lit-b3-003; paper id: mouse-geneformer-2025; domain id: cells-tissues; task: Human thymus cell-type classification; model: Mouse-Geneformer; model version: Not reported; dataset: Human thymus scRNA-seq; dataset version: Not reported; split: Not reported; metric: F1; value: 48.57; unit: %; uncertainty: Not reported; protocol: Ortholog-based gene conversion; zero-shot mouse model on human cells.; source locator: Table 4, h/ Thymus row, Mouse-Geneformer Zero-shot F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11964219/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Mouse-Geneformer: Human thymus cell-type classification
subject: Reported F1 for Mouse-Geneformer

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