rewirebio.iobenchmarks
Result

Casf screening success rate (top-fraction cutoff not stated; printed beside EF 1%) of Vina on CASF-2016 blind docked poses

42.1% Casf screening success rate (top-fraction cutoff not stated; printed beside EF 1%)

Methods

Tested configuration
Vina
Task
Protein–ligand virtual screening
Dataset
CASF-2016 blind docked poses
Procedure
Vina scoring on the same DiffDock-NMDN blind docked poses; not ligand-pose RMSD.
Evaluation
Vina: Protein–ligand virtual screening
Coverage
Not reported scored / Not reported eligible
Uncertainty
Not yet extracted
Evidence
Independent external evaluation · source checkedNormalized Protein–Ligand Distance Likelihood Score for End-to-End Blind Docking and Virtual Screening · Table 2, Vina scoring row, success rate (%) column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Printed value
42.1
Individual claims
Normalized Protein–Ligand Distance Likelihood Score for End-to-End Blind Docking and Virtual Screening

Original source ↗

Table 2, Vina scoring row, success rate (%) column

Version: version of record
Retrieved: 2026-09-16T10:41:16.552697+00:00

source checked

["ai-assisted-source-review"] · 2026-09-16T10:41:16.554518+00:00

independent paper

Audit details

All scoring functions share DiffDock-NMDN poses via rowspan. Selected forward-screening success percentage, not docking pose success or scoring-power correlation. This verifies the central score at its source location, not every metadata field or an experimental reproduction.

Field: attributes.printed_value

Claim: claim-lit-044

Source artifact SHA-256: 194b21478aaedd9a7384cabb8b0040ca5b6a4938f4d275627b86a6b787affc20

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Extraction artifact SHA-256: 194b21478aaedd9a7384cabb8b0040ca5b6a4938f4d275627b86a6b787affc20

Extraction artifact

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: lit-044

areas
molecular-interactions
tasks
Protein–ligand virtual screening
printed value
42.1
numeric value
42.1
metric
casf-screening-success-rate
metric direction
unknown
unit
percent
source locator
Table 2, Vina scoring row, success rate (%) column
review
method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:41:16.554518+00:00; evidence: {"table_xml_id": "tbl2", "row_cells": ["Vina38", "15.18", "42.1", "0.340", "0.323"], "selected_cell_zero_based": 2, "selected_cell_xml": "<td style=\"border:none;\" align=\"center\" colspan=\"1\" rowspan=\"1\">42.1</td>", "caption": "Performance of Representative Scoring Functions on the CASF-2016 Using the DiffDock-NMDN Blind Docked Posesa"}; artifact sha256: 194b21478aaedd9a7384cabb8b0040ca5b6a4938f4d275627b86a6b787affc20; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11815853/fullTextXML; method note: independent; table-level review; reviewer note: role: omics research agent; independent source-table review; not human review; note: All scoring functions share DiffDock-NMDN poses via rowspan. Selected forward-screening success percentage, not docking pose success or scoring-power correlation. This verifies the central score at its source location, not every metadata field or an experimental reproduction.
legacy id
lit-044
missing metadata
dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted
metric qualifier
top-fraction cutoff not stated; printed beside EF 1%
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