0.91 Promoter-class F1
Eco70PromBERT · Promoter-class F1 · Independent E. coli sigma70 test dataset
- Tested configuration
- Eco70PromBERT
- Task
- E. coli sigma70 promoter prediction
- Dataset
- Independent E. coli sigma70 test dataset
- Procedure
- BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.
- Evaluation
- Eco70PromBERT: E. coli sigma70 promoter prediction
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Author-reported evaluation · source checkedTSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- independent test
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.printed_value 0.91 Individual claims | TSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column Version: version of record | source checked independent ai table review · 2026-09-16T10:41:16.544033+00:00 author reported Audit detailsF1 score is the third two-column group; selected Promoter subcolumn, not AUROC or precision. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: Claim: claim-lit-035 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- TSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-035
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- printed value
- 0.91
- numeric value
- 0.91
- metric
- Promoter-class F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.544033+00:00; notes: F1 score is the third two-column group; selected Promoter subcolumn, not AUROC or precision. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "T3", "row_cells": ["Eco70PromBERT (BERT-base + 1bp tokenizer)", "0.92", "0.90", "0.91", "0.91", "0.91", "0.91", "110", "108"], "selected_cell_zero_based": 5, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">0.91</td>", "caption": "Performance of Eco70PromBERT and popular promoter prediction models for E.coli using an independent dataset (σ70 promoters and non-promoters)."}; artifact sha256: 74278ccd77b2bc00a3f4434546545e8bdec8b0652a0e5d1862ec0f91decccd8d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC9745317/fullTextXML
- legacy id
- lit-035
- legacy row
- id: lit-035; paper id: cyaprombert-2022; domain id: microbes-communities; task: E. coli sigma70 promoter prediction; model: Eco70PromBERT; model version: Not reported; dataset: Independent E. coli sigma70 test dataset; dataset version: Not reported; split: independent test; metric: Promoter-class F1; value: 0.91; unit: unitless; uncertainty: Not reported; protocol: BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.; source locator: TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9745317/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract