Result

F1 of scGPT on hPancreas

0.55 F1

Methods

Tested configuration: scGPT
Task: Cell-type annotation
Dataset: hPancreas
Related family profiles: scGPT
Procedure: Zero-shot setting; source caption says some comparator rows come from GenePT.
Evaluation: scGPT: Cell-type annotation
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not yet extracted
Evidence: Result quoted from another source · source checkedscELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis · Table 1, hPancreas zero-shot / scGPT (z) row, F1 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Printed value 0.550 Individual claims	scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis Original source ↗ Table 1, hPancreas zero-shot / scGPT (z) row, F1 column Version: preprint archived 2025-08-23 Retrieved: 2026-09-16T10:41:16.537541+00:00	source checked ["ai-assisted-source-review"] · 2026-09-16T10:41:16.537541+00:00 paper compilation Audit details Selected first hPancreas zero-shot block and F1 last column. Caption says some scores are copied from GenePT; this is source checking of the reported table, not independent experimental evidence. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-029 Source artifact SHA-256: `ef75f0d63a567f5e9d7132fd847f44838a82a9741ae55323437e1d1812d86316` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `ef75f0d63a567f5e9d7132fd847f44838a82a9741ae55323437e1d1812d86316` Extraction artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis · Original source · preprint archived 2025-08-23

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Technical metadata and extraction receipts

Stable ID: lit-029

areas: cells-tissues
tasks: Cell-type annotation
printed value: 0.550
numeric value: 0.550
metric: f1-score
metric direction: unknown
unit: unitless
source locator: Table 1, hPancreas zero-shot / scGPT (z) row, F1 column
review: method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:41:16.537541+00:00; evidence: {"table_xml_id": "T1", "row_cells": ["scGPT (z)", "0.770", "0.610", "0.560", "0.550"], "selected_cell_zero_based": 4, "selected_cell_xml": "<td align=\"right\" valign=\"top\" rowspan=\"1\" colspan=\"1\">0.550</td>", "caption": "Scores of cell-type annotation task under different settings. Parts of the results are directly extracted from GenePT. Here PCA represents principal component analysis, and scELMo+random emb represents fine-tuning scELMo with random numbers as meaningless gene embeddings. Average ranks of all methods across datasets are summarized in Extended Data Figure 6 (b). We boldfaced the highest score of each metric for each dataset."}; artifact sha256: ef75f0d63a567f5e9d7132fd847f44838a82a9741ae55323437e1d1812d86316; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12393277/fullTextXML; method note: independent; table-level review; reviewer note: role: omics research agent; independent source-table review; not human review; note: Selected first hPancreas zero-shot block and F1 last column. Caption says some scores are copied from GenePT; this is source checking of the reported table, not independent experimental evidence. This verifies the central score at its source location, not every metadata field or an experimental reproduction.
legacy id: lit-029
missing metadata: dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted

Related records

evaluation: scGPT: Cell-type annotation
subject: Reported F1 for scGPT

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