rewirebio.iobenchmarks
Result

AUROC (Discrimination of measured binders from high-ranking docking false positives in the tested AmpC beta-lactamase hit list) of AF3 L-pLDDT (Kim, Correy, Hall et al. 2026 hit-list re-ranking) on AmpC beta-lactamase docking hit list, 1293 tested compounds

AUC = 60.5 AUROC (Discrimination of measured binders from high-ranking docking false positives in the tested AmpC beta-lactamase hit list)

Methods

Tested configuration
AF3 L-pLDDT (Kim, Correy, Hall et al. 2026 hit-list re-ranking)
Protocol
Re-ranking the AmpC beta-lactamase docking hit list by co-folding and docking scores (Kim, Correy, Hall et al. 2026)
Dataset
AmpC beta-lactamase docking hit list, 1293 tested compounds
Procedure
Re-ranking the AmpC beta-lactamase docking hit list by co-folding and docking scores (Kim, Correy, Hall et al. 2026)
Evaluation
AF3 L-pLDDT re-ranking the AmpC beta-lactamase docking hit list (Kim, Correy, Hall et al. 2026)
Coverage
Not reported scored / Not reported eligible
Uncertainty
Not reported by the source: The source prints no interval or spread for this value
Evidence
Author-reported evaluation · source checkedKim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) · Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on AmpC; printed in the body text as 'AUC = 60.5'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split
Whole tested list; no training or test split applies
Adaptation
None; pretrained models and the published docking receptor
Scoring implementation
Area under the receiver operating characteristic curve for separating true hits from non-binders, printed as a percentage

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Reported result
AUC = 60.5
Individual claims
Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text)

Original source ↗

Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on AmpC; printed in the body text as 'AUC = 60.5'

Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12)
Retrieved: 2026-10-22T11:52:32Z

source checked

["independent-cell-check","pdf-text-parse"] · 2026-10-22

author reported

Audit details

Checked against the pinned source by an automated independent re-parse. Transcription checked; not reproduced and not reviewed by a human scientist.

Field: attributes.printed_value

Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6

Hash scope: Hash scope not separately documented; inspect source record

Extraction artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6

Extraction artifact

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: hitdisc-20261022-result-kim-ampc-kim-af3-lplddt-auc

metric
auroc
metric direction
higher
unit
unitless
metric qualifier
Discrimination of measured binders from high-ranking docking false positives in the tested AmpC beta-lactamase hit list
printed value
AUC = 60.5
numeric value
60.5
source locator
Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on AmpC; printed in the body text as 'AUC = 60.5'
missing metadata
uncertainty: reason: unreported; note: The source prints no interval or spread for this value
review
method: independent-cell-check; pdf-text-parse; reviewer: claude; reviewer note: Claude review agent, independent of the extraction agent; no human review claimed; date: 2026-10-22; method note: Re-downloaded the pinned Europe PMC XML, matched its SHA-256, confirmed it holds no table-wrap element, and checked that each printed AUC string occurs verbatim in the Results section 'Co-folding struggles to reliably re-rank docking hit lists'. No figure was read.; note: Checked against the pinned source by an automated independent re-parse. Transcription checked; not reproduced and not reviewed by a human scientist.; artifact sha256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13657626/fullTextXML; receipt: data/omics/use-case-coverage-hitdisc-20261022/review.json
unit detail
printed as a percentage on a 0-100 scale
denominator
1293
numerator
247
denominator note
247 true hits (apparent Ki below 400 uM) and 1046 non-binders, which are high-ranking docking false positives
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