Result

0.264 recall

behera2024-cnvnator-1-5kb recall (deletions, [1,000-5,000) bp)

Tested configuration: CNVnator comparator (Behera et al. Table S4)
Protocol: HG002 GIAB v0.6 CNV deletion 1–5kb F-score
Dataset: HG002 35× WGS, GIAB SV v0.6 deletion subset
Procedure: amp-protocol-hg002-cnv-1-5kb
Evaluation: CNVnator deletion [1,000-5,000)
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedComprehensive genome analysis and variant detection at scale using DRAGEN; DRAGEN supplementary tables 1–17 · Supplementary Tables XLSX sheet 'S4 CNV benchmarking', J6; row [1,000-5,000); column CNVnator Recall

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Single HG002 benchmark sample
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-9307685239b3
Property and statement	Original source and location	Review and provenance
Reported result 0.264 Individual claims	Comprehensive genome analysis and variant detection at scale using DRAGEN Original source ↗ Supplementary Tables XLSX sheet 'S4 CNV benchmarking', J6; row [1,000-5,000); column CNVnator Recall Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2024-10-25 version of record; code-availability correction 2024-12-02; July 2025 issue Retrieved: 2026-10-07T12:24:43.812919+00:00	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit details Extracted by deterministic parse of the pinned XLSX cell XML (scripts in the batch retrieval log), with row and column labels asserted. printed_value is the shortest round-trip decimal of the stored cell value; source_cell_text keeps the raw stored text. Pending independent review. Independent review 2026-10-09: value and identity match the source. Post-review alignment 2026-10-09: metric_qualifier removed to match the stored amp-result-dragen-cnv-sv-1-5kb-fscore on the same protocol (the protocol already fixes the 1-5 kb deletion bin). Field: `attributes.printed_value` Source artifact SHA-256: `84abe921f340f9c8d7cf11ddd3cf5adc8e7a034db9d53f0d4e2fe292e94c1a6d` Hash scope: Hash scope not separately documented; inspect source record Format: curator_factual_receipt Inspected artifact Extraction artifact SHA-256: `c8d66e8373f22382f1c5e4a576d2c85825a18232a14767d239966bc8ab56c3d9` Extraction artifact
Reported result 0.264 Individual claims	DRAGEN supplementary tables 1–17 Original source ↗ Supplementary Tables XLSX sheet 'S4 CNV benchmarking', J6; row [1,000-5,000); column CNVnator Recall Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: MOESM3 XLSX retrieved 2026-10-07 Retrieved: 2026-10-07T12:25:22.006309+00:00	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit details Extracted by deterministic parse of the pinned XLSX cell XML (scripts in the batch retrieval log), with row and column labels asserted. printed_value is the shortest round-trip decimal of the stored cell value; source_cell_text keeps the raw stored text. Pending independent review. Independent review 2026-10-09: value and identity match the source. Post-review alignment 2026-10-09: metric_qualifier removed to match the stored amp-result-dragen-cnv-sv-1-5kb-fscore on the same protocol (the protocol already fixes the 1-5 kb deletion bin). Field: `attributes.printed_value` Source artifact SHA-256: `edf36c4d94f2f68ce26fe2d7edfb0dfdc8e4d1774367ff10551dc32cc280b74e` Hash scope: Hash scope not separately documented; inspect source record Format: curator_factual_receipt Inspected artifact Extraction artifact SHA-256: `c8d66e8373f22382f1c5e4a576d2c85825a18232a14767d239966bc8ab56c3d9` Extraction artifact

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Sources and history

Release 2026-10-09-9307685239b3 · Record review: source checked

2 source records and release history

Comprehensive genome analysis and variant detection at scale using DRAGEN · Original source · 2024-10-25 version of record; code-availability correction 2024-12-02; July 2025 issue
DRAGEN supplementary tables 1–17 · Original source · MOESM3 XLSX retrieved 2026-10-07

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Technical metadata and extraction receipts

Stable ID: cnv-20261009-result-behera2024-cnvnator-1-5kb-recall

metric: recall
metric direction: higher
unit: fraction
printed value: 0.264
numeric value: 0.264
source locator: Supplementary Tables XLSX sheet 'S4 CNV benchmarking', J6; row [1,000-5,000); column CNVnator Recall
missing metadata: uncertainty: reason: unreported
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the artifact and matched its SHA-256. Read the cell with a separate stdlib OOXML/XML parser written for this review (DRAGEN supplement sheet 'S4 CNV benchmarking'); the extractor's scripts were not imported or run. Checked printed and numeric value (shortest round-trip decimal of the stored double), raw cell text, metric, qualifier, unit and direction from the row and column headers, and the linked evaluation's configuration and protocol.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: c8d66e8373f22382f1c5e4a576d2c85825a18232a14767d239966bc8ab56c3d9; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41587-024-02382-1/MediaObjects/41587_2024_2382_MOESM3_ESM.xlsx; note: Extracted by deterministic parse of the pinned XLSX cell XML (scripts in the batch retrieval log), with row and column labels asserted. printed_value is the shortest round-trip decimal of the stored cell value; source_cell_text keeps the raw stored text. Pending independent review. Independent review 2026-10-09: value and identity match the source. Post-review alignment 2026-10-09: metric_qualifier removed to match the stored amp-result-dragen-cnv-sv-1-5kb-fscore on the same protocol (the protocol already fixes the 1-5 kb deletion bin).
raw xml value: 0.264

Related records

evaluation: CNVnator deletion [1,000-5,000)

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