Result

0.94 AUROC

PhyloGPN · AUROC · ClinVar 3-prime UTR variants

Tested configuration: PhyloGPN
Task: ClinVar 3-prime UTR variant classification
Dataset: ClinVar 3-prime UTR variants
Procedure: log-likelihood-ratio scoring
Evaluation: PhyloGPN: ClinVar 3-prime UTR variant classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checkedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: paper evaluation
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: ClinVar 3-prime UTR variant classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.94 Individual claims	A Phylogenetic Approach to Genomic Language Modeling Original source ↗ Table 1, 3-prime UTR row, PhyloGPN AUROC column Version: preprint version in PMC Retrieved: 2026-09-16T10:38:57.558218+00:00	source checked independent ai table review · 2026-09-16T10:38:57.558218+00:00 author reported Audit details Matched 3-prime UTR row and PhyloGPN column (0.94). Caption specifies log-likelihood-ratio predictions of ClinVar classes and explicitly defines each cell as AUROC. Field: `attributes.printed_value` Claim: claim-b2-phylogpn-2025 Source artifact SHA-256: `807f3a26cbfa9b5ce238d92164bd523302c67d1c5794b08273c51cca1acd4224` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `807f3a26cbfa9b5ce238d92164bd523302c67d1c5794b08273c51cca1acd4224` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

A Phylogenetic Approach to Genomic Language Modeling · Original source · preprint version in PMC

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Technical metadata and extraction receipts

Stable ID: b2-phylogpn-2025

areas: dna-genomes
tasks: ClinVar 3-prime UTR variant classification
printed value: 0.94
numeric value: 0.94
metric: AUROC
metric direction: unknown
unit: fraction
uncertainty: Not reported
source locator: Table 1, 3-prime UTR row, PhyloGPN AUROC column
review: method: independent_ai_table_review; reviewer: Codex secondary table review; reviewed at: 2026-09-16T10:38:57.558218+00:00; notes: Matched 3-prime UTR row and PhyloGPN column (0.94). Caption specifies log-likelihood-ratio predictions of ClinVar classes and explicitly defines each cell as AUROC.; evidence: Original PMC XML table headers, row groups and caption inspected; printed value 0.94.; artifact sha256: 807f3a26cbfa9b5ce238d92164bd523302c67d1c5794b08273c51cca1acd4224; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11908359/fullTextXML
legacy id: b2-phylogpn-2025
legacy row: id: b2-phylogpn-2025; paper id: phylogpn-2025; domain id: dna-genomes; task: ClinVar 3-prime UTR variant classification; model: PhyloGPN; model version: not stated in table; dataset: ClinVar 3-prime UTR variants; dataset version: Not reported; split: paper evaluation; metric: AUROC; value: 0.94; unit: fraction; uncertainty: Not reported; protocol: log-likelihood-ratio scoring; source locator: Table 1, 3-prime UTR row, PhyloGPN AUROC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11908359/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:33:26Z
missing metadata: dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: PhyloGPN: ClinVar 3-prime UTR variant classification
subject: Reported AUROC for PhyloGPN

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