AUROC of Nucleotide Transformer + NN (middle) on gene fusion breakpoint DNA sequences
0.994 AUROC
Methods
- Tested pipeline
- Nucleotide Transformer + NN (middle)
- Task
- gene fusion breakpoint classification
- Dataset
- gene fusion breakpoint DNA sequences
- Procedure
- middle embedding with neural-network classifier
- Evaluation
- Nucleotide Transformer + NN (middle): gene fusion breakpoint classification
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not yet extracted
- Evidence
- Independent external evaluation · source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- full test set
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Printed value 0.994 Individual claims | Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences Table 2, NT / NN (middle) row, ROC AUC column Version: journal full text in PMC | source checked ["ai-assisted-source-review"] · 2026-09-16T10:38:57.558209+00:00 independent paper Audit detailsMatched NT jointly with NN (middle) and ROC AUC 0.994 in the full-test-set table. NT with SVM reports 0.995 and is a separate pipeline. Field: Claim: claim-b2-fusion-breakpoint-foundation-models-2026 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: b2-fusion-breakpoint-foundation-models-2026
- areas
- dna-genomes
- tasks
- gene fusion breakpoint classification
- printed value
- 0.994
- numeric value
- 0.994
- metric
- auroc
- metric direction
- unknown
- unit
- unitless
- source locator
- Table 2, NT / NN (middle) row, ROC AUC column
- review
- method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:38:57.558209+00:00; evidence: Original PMC XML table headers, row groups and caption inspected; printed value 0.994.; artifact sha256: 0f4d9de77f1e39cfd2164a20653d86370767da684dc22d17e09f589761abeb5f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13182013/fullTextXML; method note: independent; table-level review; reviewer note: role: secondary table review; note: Matched NT jointly with NN (middle) and ROC AUC 0.994 in the full-test-set table. NT with SVM reports 0.995 and is a separate pipeline.
- legacy id
- b2-fusion-breakpoint-foundation-models-2026
- missing metadata
- dataset version: reason: unextracted; uncertainty: reason: unextracted