Result

0.994 ROC AUC

Nucleotide Transformer + NN (middle) · ROC AUC · gene fusion breakpoint DNA sequences

Tested pipeline: Nucleotide Transformer + NN (middle)
Task: gene fusion breakpoint classification
Dataset: gene fusion breakpoint DNA sequences
Procedure: middle embedding with neural-network classifier
Evaluation: Nucleotide Transformer + NN (middle): gene fusion breakpoint classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: full test set
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: gene fusion breakpoint classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.994 Individual claims	Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences Original source ↗ Table 2, NT / NN (middle) row, ROC AUC column Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558209+00:00	source checked independent ai table review · 2026-09-16T10:38:57.558209+00:00 independent paper Audit details Matched NT jointly with NN (middle) and ROC AUC 0.994 in the full-test-set table. NT with SVM reports 0.995 and is a separate pipeline. Field: `attributes.printed_value` Claim: claim-b2-fusion-breakpoint-foundation-models-2026 Source artifact SHA-256: `0f4d9de77f1e39cfd2164a20653d86370767da684dc22d17e09f589761abeb5f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `0f4d9de77f1e39cfd2164a20653d86370767da684dc22d17e09f589761abeb5f` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Original source · journal full text in PMC

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Technical metadata and extraction receipts

Stable ID: b2-fusion-breakpoint-foundation-models-2026

areas: dna-genomes
tasks: gene fusion breakpoint classification
printed value: 0.994
numeric value: 0.994
metric: ROC AUC
metric direction: unknown
unit: fraction
uncertainty: Not reported
source locator: Table 2, NT / NN (middle) row, ROC AUC column
review: method: independent_ai_table_review; reviewer: Codex secondary table review; reviewed at: 2026-09-16T10:38:57.558209+00:00; notes: Matched NT jointly with NN (middle) and ROC AUC 0.994 in the full-test-set table. NT with SVM reports 0.995 and is a separate pipeline.; evidence: Original PMC XML table headers, row groups and caption inspected; printed value 0.994.; artifact sha256: 0f4d9de77f1e39cfd2164a20653d86370767da684dc22d17e09f589761abeb5f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13182013/fullTextXML
legacy id: b2-fusion-breakpoint-foundation-models-2026
legacy row: id: b2-fusion-breakpoint-foundation-models-2026; paper id: fusion-breakpoint-foundation-models-2026; domain id: dna-genomes; task: gene fusion breakpoint classification; model: Nucleotide Transformer + NN (middle); model version: not stated in table; dataset: gene fusion breakpoint DNA sequences; dataset version: Not reported; split: full test set; metric: ROC AUC; value: 0.994; unit: fraction; uncertainty: Not reported; protocol: middle embedding with neural-network classifier; source locator: Table 2, NT / NN (middle) row, ROC AUC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13182013/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:33:26Z
missing metadata: dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

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