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Result

0.77 indel F1-score

Strelka2 indel F1-score

Tested configuration
Strelka2
Protocol
Lancet paper virtual-tumor SNV/indel benchmark
Dataset
NA12892/NA12891 virtual tumor and matched normal
Procedure
Separate SNV and indel virtual-tumor pairs; real germline-supporting reads swapped at reference-homozygous/alternate-homozygous loci; binomial VAF means 0.05, 0.1, 0.2, 0.3; insertion max 13 bp, deletion max 35 bp.
Evaluation
Strelka2 evaluation
Coverage
scored: unreported; eligible: unreported
Uncertainty
Not reported
Evidence
Independent external evaluation · source checkedGenome-wide somatic variant calling using localized colored de Bruijn graphs · Table 1, Strelka2 row (JATS Tab1)

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
Property and statementOriginal source and locationReview and provenance
Reported result
0.77
Individual claims		Genome-wide somatic variant calling using localized colored de Bruijn graphs

Original source ↗

Table 1, Strelka2 row (JATS Tab1)

Version: Europe PMC fullTextXML retrieved 2026-10-07T12:24:27.822425+00:00
Retrieved: 2026-10-07T12:24:27.822425+00:00

source checked

automated source review · 2026-10-07T13:38:59Z

independent paper

Audit details

Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.

Field: attributes.printed_value

Source artifact SHA-256: 08fa271d01e0583f570c97dd0d260073caf8f48877fa9f6d6eabc858b6e518d5

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

View linked audit checks and correction history

Release 2026-10-07-1448159e6a81 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: amp-oncology-rna-20261007-issue-10-result-strelka2-indel-f1-score

metric
indel F1-score
metric direction
higher
missing metadata
None recorded
numeric value
0.77
printed value
0.77
review
method: automated_source_review; notes: Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.; reviewed at: 2026-10-07T13:38:59Z; reviewer: Claude Sonnet AMP-integration worker, bounded transcription of Codex-checked primary values (workbench/amp-supervision/primary-review.md, integration-review-corrections.md); pending qualified human scientific review
source locator
Table 1, Strelka2 row (JATS Tab1)
uncertainty
Not reported
unit
fraction
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