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Result

0.946 Promoter Arabidopsis NonTATA AUC

DNABERT-2 Promoter Arabidopsis NonTATA AUC

Tested configuration
DNABERT-2 (Promoter Arabidopsis NonTATA classification)
Protocol
Feng Promoter Arabidopsis NonTATA sequence classification
Dataset
Feng Promoter Arabidopsis NonTATA dataset
Procedure
Table 2, frozen embeddings + task-specific random forest classifier
Evaluation
DNABERT-2 Promoter Arabidopsis NonTATA evaluation
Coverage
scored: unreported; eligible: unreported
Uncertainty
Not reported
Evidence
Independent external evaluation · source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 2, Promoter Arabidopsis NonTATA row, DNABERT-2 column (deterministic XML extraction; see data/omics/amp-coverage-20261007/feng/selected-rows.json)

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split
Original predefined split retained where clearly defined; otherwise a random 70:30 train/test split, tuned by fivefold cross-validation. This ref34 multispecies promoter benchmark's own partitioning is not asserted to follow the DNABERT-2/NT reshuffle rule absent explicit confirmation.
Adaptation
Frozen pretrained representation plus a supervised random-forest classifier head fitted for this exact task
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
Property and statementOriginal source and locationReview and provenance
Reported result
0.9457
Individual claims		Benchmarking DNA foundation models for genomic and genetic tasks

Original source ↗

Table 2, Promoter Arabidopsis NonTATA row, DNABERT-2 column (deterministic XML extraction; see data/omics/amp-coverage-20261007/feng/selected-rows.json)

Version: PMC12663285.1
Retrieved: 2026-09-17T07:54:51.004119+00:00

source checked

automated source review · 2026-10-07T13:38:59Z

independent paper

Audit details

Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.

Field: attributes.printed_value

Source artifact SHA-256: 5d8ca9bcf88cc1b38ad667906a2e4699b1aefa6d31c6f49259784930353f3202

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

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Sources and history

View linked audit checks and correction history

Release 2026-10-07-1448159e6a81 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: amp-feng-20261007-result-promoter-nontata-dnabert-2-auc

metric
Promoter Arabidopsis NonTATA AUC
metric direction
higher
missing metadata
None recorded
numeric value
0.9457
printed value
0.9457
review
method: automated_source_review; notes: Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.; reviewed at: 2026-10-07T13:38:59Z; reviewer: Claude Sonnet AMP-integration worker, bounded transcription of Codex-checked primary values (workbench/amp-supervision/primary-review.md, integration-review-corrections.md); pending qualified human scientific review
source locator
Table 2, Promoter Arabidopsis NonTATA row, DNABERT-2 column (deterministic XML extraction; see data/omics/amp-coverage-20261007/feng/selected-rows.json)
uncertainty
Not reported
unit
AUC
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