Model

HelixFold 3

PaddleHelix model built to replicate AlphaFold 3, predicting the structures of proteins, nucleic acids and ligands, with an open-source release for academic research.

Results are recorded on linked configurations and versions of this model. Their settings and evaluations are kept separate below.

2 configurations with results

Results on linked records

This model has no results of its own in this release. 2 linked records have results. They are not assigned to the underlying model: each record keeps its own settings and evaluations, and its scores are on its own page.

HelixFold3 HelixFold3/73cd80b-hpc1 (Ludaic and Elofsson 2026 RNA benchmark run) Configuration · configuration of this model · 30 evaluations · 30 results
HelixFold 3 — FoldBench published inference Configuration · configuration of this model · 9 evaluations · 35 results

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Evidence

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Evidence table

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2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Description PaddleHelix model built to replicate AlphaFold 3, predicting the structures of proteins, nucleic acids and ligands, with an open-source release for academic research. Individual claims	Benchmarking all-atom biomolecular structure prediction with FoldBench Original source ↗ ucc-research-source-foldbench-paper: Introduction ('the training code and datasets of AlphaFold 3 are not publicly available ... several open-source reproductions such as Boltz-1, Protenix, Chai-1 and HelixFold 3 have emerged'; 'five recent all-atom predictors') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 Retrieved: 2026-09-30T21:23:29Z	conflicting claim ["automated-source-review","ai-assisted-source-review"] · 2026-10-11 Audit details Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries. Conflicting source claim: `"Open-source reproduction of AlphaFold 3 that predicts the all-atom structures of biomolecular complexes."`. Claim record status: source_checked. Field: `description` Claim: metadata-correction-ed9ece7a542fa47fda63 Source artifact SHA-256: `3104bc7a0c5dd138421edfae72008fe1369b18192702fb7474a2517aece31928` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description PaddleHelix model built to replicate AlphaFold 3, predicting the structures of proteins, nucleic acids and ligands, with an open-source release for academic research. Individual claims	FoldBench supplementary target coverage and performance Original source ↗ ucc-research-source-foldbench-paper: Introduction ('the training code and datasets of AlphaFold 3 are not publicly available ... several open-source reproductions such as Boltz-1, Protenix, Chai-1 and HelixFold 3 have emerged'; 'five recent all-atom predictors') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 Retrieved: 2026-09-30T21:26:52Z	conflicting claim ["automated-source-review","ai-assisted-source-review"] · 2026-10-11 Audit details Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries. Conflicting source claim: `"Open-source reproduction of AlphaFold 3 that predicts the all-atom structures of biomolecular complexes."`. Claim record status: source_checked. Field: `description` Claim: metadata-correction-ed9ece7a542fa47fda63 Source artifact SHA-256: `c699bd6b7ef8277ce4f89d12ff2365cd7a199dbc7eb4b674aeba4e62da92d5bb` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

Benchmarking all-atom biomolecular structure prediction with FoldBench · Original source · 10.1038/s41467-025-67127-3
FoldBench supplementary target coverage and performance · Original source · Supplementary Information to 10.1038/s41467-025-67127-3

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Technical metadata and extraction receipts

Stable ID: ucc-research-model-helixfold3

entity level: family

Related records

configuration of: HelixFold3 HelixFold3/73cd80b-hpc1 (Ludaic and Elofsson 2026 RNA benchmark run)
subject: HelixFold 3: description
configuration of: HelixFold 3 — FoldBench published inference

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