Model

RhoMax

Graph neural network that predicts the maximum absorption wavelength of a microbial rhodopsin from its AlphaFold2-predicted 3D structure.

10 evaluations · 40 results

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

10 evaluations · 40 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: RhoMax	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.050 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	10.45 ± 11.6 MAE nanometre · lower Uncertainty: SD 11.6 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.03 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column median rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	6.83 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column median rhomax
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.057 ± 0.05 MAE electronvolt · lower Uncertainty: SD 0.05 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	13.46 ± 11.7 MAE nanometre · lower Uncertainty: SD 11.7 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.045 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	10.9 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column median rhomax-retinal
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.045 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	8.85 ± 10.5 MAE nanometre · lower Uncertainty: SD 10.5 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.025 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column median rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	5.2 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column median rhomax
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.046 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	10.29 ± 12.2 MAE nanometre · lower Uncertainty: SD 12.2 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.027 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	6.14 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column median rhomax-retinal
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.034 ± 0.04 MAE electronvolt · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	7.28 ± 10.2 MAE nanometre · lower Uncertainty: SD 10.2 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column mean and standard deviation rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.014 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column median rhomax
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	3.4 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column median rhomax
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.045 ± 0.04 MAE electronvolt · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	10.24 ± 9.3 MAE nanometre · lower Uncertainty: SD 9.3 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.036 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	7.95 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column median rhomax-retinal
Configuration: RhoMax	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	0.045 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 3, column mean and standard deviation rhomax

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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RhoMax · configuration of
RhoMax + retinal · configuration of

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Description Graph neural network that predicts the maximum absorption wavelength of a microbial rhodopsin from its AlphaFold2-predicted 3D structure. Individual claims	RhoMax 2024 primary article Original source ↗ uc20260930-source-rhomax-2024: Abstract; Introduction paragraph 5 Version: 2024 journal article; XML pinned by SHA-256 Retrieved: 2026-09-30	source checked ["automated-source-review","ai-assisted-source-review"] · 2026-10-10 Audit details Description written from the cited source text; provenance text was generic and is kept here as previous_value. Independent review 2026-10-10: every stated fact is supported by the cited text. Field: `description` Claim: metadata-correction-772cbc718fc144ee85b5 Source artifact SHA-256: `93814dd95c40cb109d592c2917728dc568c0445571e08180b188e726a4bd8f19` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

RhoMax 2024 primary article · Original source · 2024 journal article; XML pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: uc20260930-model-rhomax

areas: proteins-complexes
source locator: Table 1; Comparison to Previous Methods; Network Architecture
review: method: automated-source-review; reviewer: codex; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.; reviewer note: role: experimental use-case curation
entity level: family
identity scope: Family/method identity only; no undocumented checkpoint equivalence.

Related records

subject: RhoMax: description
configuration of: RhoMax
configuration of: RhoMax + retinal

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