BACPI
Sequence-based affinity predictor whose 1D convolutional protein network and ligand graph attention transformer are joined by bi-directional attention.
Results are recorded on linked configurations and versions of this model. Their settings and evaluations are kept separate below.
Results on linked records
This model has no results of its own in this release. 2 linked records have results. They are not assigned to the underlying model: each record keeps its own settings and evaluations, and its scores are on its own page.
- BACPI as trained for the Boltz-2 affinity baselines Configuration · configuration · 3 evaluations · 28 results
- BACPI ligand-only ablation (GAT) Configuration · configuration · 3 evaluations · 28 results
Overview
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Evidence
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction, supplementary appendix · Original source · bioRxiv v1 posted 2025-06-18; supplement PDF as deposited in Europe PMC PMC12262699 (PPR1038344)
Technical metadata and extraction receipts
Stable ID: uc-leadopt-20261022-model-bacpi
- areas
- molecular-interactions
- contexts
- research
- method types
- supervised_machine_learning
- entity level
- family
- reported name
- BACPI
- source locator
- Appendix D.2.2, 'Baselines'
- missing metadata
- version: reason: unreported; note: No checkpoint or release version is printed
- review
- method: source-hash-verification; pdf-text-parse; independent-cell-check; rendered-source-visual-check; ai-assisted-source-review; method note: Re-retrieved all three sources and matched each pinned SHA-256. Re-rendered the Boltz-2 supplement with pdftotext -layout (poppler 26.08.0) and matched the text layer's recorded SHA-256. Re-read all 256 cells with a parser written for this review that does not import the extraction script, matching each result to its cell through its own source_locator, and separately read appendix tables 11, 12 and 14 from PNG renderings of PDF pages 29 and 30 at 160 dpi, and Ross Table 3 from the pinned XML markup. Checked printed value, numeric value, locator, metric concept, qualifier, direction, unit, uncertainty and the linked configuration, protocol and dataset, and that every N/A or '-' cell is recorded as missing with a reason.; reviewer: claude; reviewer note: Claude review agent, independent of the extraction agent; no human review claimed; reviewed at: 2026-10-22T13:40:00Z; artifact sha256: be867a5d92add8b223d47d882a4213ad489741f3e4d5081a0901a54370342569; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12262699/supplementaryFiles
Related records
- configuration of: BACPI as trained for the Boltz-2 affinity baselines
- configuration of: BACPI ligand-only ablation (GAT)