BioDiscoveryAgent
LLM agent that proposes the next batch of genes to perturb from the experimental history and its own prior knowledge.
Results are recorded on linked configurations and versions of this method. Their settings and evaluations are kept separate below.
Results on linked records
This method has no results of its own in this release. 17 linked records have results. They are not assigned to the underlying method: each record keeps its own settings and evaluations, and its scores are on its own page.
- BDA, llama-3-1-8b backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA, qwen-2-7b backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA-Rand, claude-3-5-sonnet backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA-Rand, llama-3-1-8b backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA-Rand, qwen-2-7b backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA (Replicated), claude-3-5-sonnet backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BDA (Reported Numbers), claude-3-5-sonnet backbone (Gupta et al. 2025) Configuration · configuration of this method · 5 evaluations · 5 results
- BioDiscoveryAgent (No-Tools), Claude 3.5 Sonnet (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), Claude 3 Haiku (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), Claude 3 Opus (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), Claude 3 Sonnet (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), Claude v1 (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), GPT-3.5-Turbo (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), GPT-4o (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), o1-mini (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (No-Tools), o1-preview (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
- BioDiscoveryAgent (Claude 3.5 Sonnet) combined with the Coreset acquisition function (Roohani et al. 2025) Configuration · configuration of this method · 6 evaluations · 12 results
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
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How it works, versions and access
Additional methodological details, versions and access terms have not yet been extracted into a structured profile for this method. Consult the linked sources and evaluation records below.
Evidence
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Evidence table
Inspect claims, sources and review details
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments · Original source · arXiv:2405.17631 version 3, updated 2025-03-09; published as a conference paper at ICLR 2025
- LLMs for Bayesian Optimization in Scientific Domains: Are We There Yet? · Original source · Findings of the Association for Computational Linguistics: EMNLP 2025, pages 15482-15510
Technical metadata and extraction receipts
Stable ID: tgtval-20261009-method-biodiscoveryagent
- areas
- cells-tissues
- contexts
- research
- method types
- foundation_model
- reported name
- BioDiscoveryAgent
- entity level
- method
- source locator
- Roohani et al. 2025 section 3; Gupta et al. 2025 section 5
- missing metadata
- version: reason: inapplicable; note: Family record; settings are on configurations
Related records
- configuration of: BDA, llama-3-1-8b backbone (Gupta et al. 2025)
- configuration of: BDA, qwen-2-7b backbone (Gupta et al. 2025)
- configuration of: BDA-Rand, claude-3-5-sonnet backbone (Gupta et al. 2025)
- configuration of: BDA-Rand, llama-3-1-8b backbone (Gupta et al. 2025)
- configuration of: BDA-Rand, qwen-2-7b backbone (Gupta et al. 2025)
- configuration of: BDA (Replicated), claude-3-5-sonnet backbone (Gupta et al. 2025)
- configuration of: BDA (Reported Numbers), claude-3-5-sonnet backbone (Gupta et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), Claude 3.5 Sonnet (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), Claude 3 Haiku (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), Claude 3 Opus (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), Claude 3 Sonnet (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), Claude v1 (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), GPT-3.5-Turbo (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), GPT-4o (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), o1-mini (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (No-Tools), o1-preview (Roohani et al. 2025)
- configuration of: BioDiscoveryAgent (Claude 3.5 Sonnet) combined with the Coreset acquisition function (Roohani et al. 2025)