Octopus
Haplotype-based germline and somatic small-variant caller.
Results are recorded on linked configurations and versions of this method. Their settings and evaluations are kept separate below.
Results on linked records
This method has no results of its own in this release. 2 linked records have results. They are not assigned to the underlying method: each record keeps its own settings and evaluations, and its scores are on its own page.
- Octopus-hard v0.7.4 (Sahraeian et al. 2022) Configuration · configuration · 6 evaluations · 154 results
- Octopus-RF v0.7.4 (Sahraeian et al. 2022) Configuration · configuration · 6 evaluations · 154 results
Overview
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Evidence
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Evidence table
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Sources and history
Release 2026-10-10-cbb3da59bc08 · Record review: source checked
1 source record and release history
- Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample · Original source · Genome Biology 23:12, published 2022-01-07; PMC8740374 full-text XML
Technical metadata and extraction receipts
Stable ID: somatic-neusomatic-20261010-method-octopus
- areas
- dna-genomes
- contexts
- clinical_research
- method types
- conventional_pipeline
- reported name
- Octopus
- entity level
- method
- source locator
- Methods 'Somatic mutation detection algorithms'
- missing metadata
- version: reason: inapplicable; note: Family record; versions are on configurations
Related records
- configuration of: Octopus-hard v0.7.4 (Sahraeian et al. 2022)
- configuration of: Octopus-RF v0.7.4 (Sahraeian et al. 2022)