Gnina
Molecular docking program that scores protein-ligand poses with the classical AD4, Vina and Vinardo functions and with the CNNscore and CNNaffinity convolutional neural network functions.
Results are recorded on linked configurations and versions of this method. Their settings and evaluations are kept separate below.
Results on linked records
This method has no results of its own in this release. 13 linked records have results. They are not assigned to the underlying method: each record keeps its own settings and evaluations, and its scores are on its own page.
- Gnina (CNNaffinity) docking baseline Configuration · configuration · 3 evaluations · 32 results
- Gnina (CNNscore) docking baseline Configuration · configuration · 3 evaluations · 32 results
- Gnina (Vina) docking baseline Configuration · configuration · 3 evaluations · 32 results
- Gnina (AD4) rescoring of AF3 top-ranked poses Configuration · configuration · 1 evaluation · 10 results
- Gnina (AD4) rescoring of Protenix top-ranked poses Configuration · configuration · 2 evaluations · 20 results
- Gnina (CNNaffinity) rescoring of AF3 top-ranked poses Configuration · configuration · 1 evaluation · 10 results
- Gnina (CNNaffinity) rescoring of Protenix top-ranked poses Configuration · configuration · 2 evaluations · 20 results
- Gnina (CNNscore) rescoring of AF3 top-ranked poses Configuration · configuration · 1 evaluation · 10 results
- Gnina (CNNscore) rescoring of Protenix top-ranked poses Configuration · configuration · 2 evaluations · 20 results
- Gnina (Vina) rescoring of AF3 top-ranked poses Configuration · configuration · 1 evaluation · 10 results
- Gnina (Vina) rescoring of Protenix top-ranked poses Configuration · configuration · 2 evaluations · 20 results
- Gnina (Vinardo) rescoring of AF3 top-ranked poses Configuration · configuration · 1 evaluation · 10 results
- Gnina (Vinardo) rescoring of Protenix top-ranked poses Configuration · configuration · 1 evaluation · 10 results
Overview
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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
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How it works, versions and access
Strengths, limitations and unresolved questions
Evidence
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Evidence table
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Shen et al. 2025, Chemical Science (Europe PMC full text) · Original source · PMC12704515 (Chem Sci, published 2025-12-11)
Technical metadata and extraction receipts
Stable ID: hitdisc-20261022-method-gnina
- areas
- molecular-interactions
- contexts
- research
- method types
- supervised_machine_learning
- entity level
- method
- reported name
- Gnina
- version
- 1.3 (as used by Shen et al. 2025)
- access
- No access terms are stated in the source
- source locator
- Methods 'Gnina'; Methods 'Baseline docking results'
- provenance note
- Created from the comparator description in Shen et al. 2025; the Gnina primary paper (ref 32 of that source) was not retrieved.
- review
- method: scope-review; automated-source-review; reviewer: claude; reviewer note: Claude review agent, independent of the extraction agent; no human review claimed; date: 2026-10-22; method note: Read the record against the pinned sources and against docs/use-cases.md and docs/record-contract.md.; note: Record checked against the pinned source and the record contract. Transcription checked; not reproduced and not reviewed by a human scientist.; artifact sha256: 11a4cee97057d9e72f9393024d22fdd169e3134f493367eee2f7869facf9ccf8; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12704515/fullTextXML; receipt: data/omics/use-case-coverage-hitdisc-20261022/review.json
Related records
- configuration of: Gnina (CNNaffinity) docking baseline
- configuration of: Gnina (CNNscore) docking baseline
- configuration of: Gnina (Vina) docking baseline
- configuration of: Gnina (AD4) rescoring of AF3 top-ranked poses
- configuration of: Gnina (AD4) rescoring of Protenix top-ranked poses
- configuration of: Gnina (CNNaffinity) rescoring of AF3 top-ranked poses
- configuration of: Gnina (CNNaffinity) rescoring of Protenix top-ranked poses
- configuration of: Gnina (CNNscore) rescoring of AF3 top-ranked poses
- configuration of: Gnina (CNNscore) rescoring of Protenix top-ranked poses
- configuration of: Gnina (Vina) rescoring of AF3 top-ranked poses
- configuration of: Gnina (Vina) rescoring of Protenix top-ranked poses
- configuration of: Gnina (Vinardo) rescoring of AF3 top-ranked poses
- configuration of: Gnina (Vinardo) rescoring of Protenix top-ranked poses