| attributes.comparison.adaptation None; selection among sampled models Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.adaptation Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.aggregation Mean over targets Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.aggregation Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.budget 200 models per target Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.budget Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.dataset_version 110 complexes deposited after 30 September 2021 Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.dataset_version Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.inputs Sequences and MSAs; no templates of the complex Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.inputs Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.metric_implementation DockQ (Basu and Wallner 2016; Mirabello and Wallner 2024) Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.metric_implementation Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.population 110 antibody-antigen complexes Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.population Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.protocol_id structural-20261009-protocol-fromm2026-abag-model-selection Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.protocol_id Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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| attributes.comparison.split Temporal split at the AlphaFold3 training cutoff Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.split Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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attributes.limitations2 values- Defined by the source; uses the experimental structure, so not usable before an experiment.
- Run by authors who did not develop AlphaFold3.
Context-only references | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeTM' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.limitations Source artifact SHA-256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact |
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