Published somatic caller comparison; transcribed, not reproduced.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-10-09-ba02f2f4a36e · Evidence verified: Not verified
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1 evaluation · 6 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
Source checking is not independent reproduction. Release 2026-10-09-ba02f2f4a36e.
somatic-20261009-protocol-guille2025-seqc2-fd-wes-snv
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
36 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencing Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Briefings in Bioinformatics 26(1):bbae697, published online 2025-01-18; PMC11790059 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Not reported Context-only references | Guille et al. 2025, Supplementary Table S7 (validation dataset) Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: tables7_bbae697.xls inside the Europe PMC supplementary files bundle for PMC11790059 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of tables7_bbae697.xls. Retrieved as one member of the Europe PMC supplementaryFiles zip. The zip is assembled per request (member timestamps equal the request time), so only the member file hash is pinned. Archive member: tables7_bbae697.xls |
| attributes.comparison.aggregation Pooled over the target regions of one pair Context-only references | A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencing Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Briefings in Bioinformatics 26(1):bbae697, published online 2025-01-18; PMC11790059 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Pooled over the target regions of one pair Context-only references | Guille et al. 2025, Supplementary Table S7 (validation dataset) Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: tables7_bbae697.xls inside the Europe PMC supplementary files bundle for PMC11790059 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of tables7_bbae697.xls. Retrieved as one member of the Europe PMC supplementaryFiles zip. The zip is assembled per request (member timestamps equal the request time), so only the member file hash is pinned. Archive member: tables7_bbae697.xls |
| attributes.comparison.budget Not reported Context-only references | A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencing Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Briefings in Bioinformatics 26(1):bbae697, published online 2025-01-18; PMC11790059 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Guille et al. 2025, Supplementary Table S7 (validation dataset) Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: tables7_bbae697.xls inside the Europe PMC supplementary files bundle for PMC11790059 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of tables7_bbae697.xls. Retrieved as one member of the Europe PMC supplementaryFiles zip. The zip is assembled per request (member timestamps equal the request time), so only the member file hash is pinned. Archive member: tables7_bbae697.xls |
| attributes.comparison.dataset_version Not reported Context-only references | A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencing Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Briefings in Bioinformatics 26(1):bbae697, published online 2025-01-18; PMC11790059 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | Guille et al. 2025, Supplementary Table S7 (validation dataset) Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: tables7_bbae697.xls inside the Europe PMC supplementary files bundle for PMC11790059 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of tables7_bbae697.xls. Retrieved as one member of the Europe PMC supplementaryFiles zip. The zip is assembled per request (member timestamps equal the request time), so only the member file hash is pinned. Archive member: tables7_bbae697.xls |
| attributes.comparison.inputs Tumour-normal WES, 76x tumour (Table 2), bwa mem alignment Context-only references | A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencing Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Briefings in Bioinformatics 26(1):bbae697, published online 2025-01-18; PMC11790059 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Tumour-normal WES, 76x tumour (Table 2), bwa mem alignment Context-only references | Guille et al. 2025, Supplementary Table S7 (validation dataset) Supplementary Table S7 row 12 (Tools 'Varscan2', Type of variant 'SNV') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: tables7_bbae697.xls inside the Europe PMC supplementary files bundle for PMC11790059 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of tables7_bbae697.xls. Retrieved as one member of the Europe PMC supplementaryFiles zip. The zip is assembled per request (member timestamps equal the request time), so only the member file hash is pinned. Archive member: tables7_bbae697.xls |
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
Stable ID: somatic-20261009-eval-guille2025-varscan2-seqc2-fd-wes-snv