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1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Gena LM bigbird (Manzo et al. 2025) | Protocol: Allelic reporter effect correlation in HeLa (Manzo et al. 2025 Table 1) Dataset: HeLa regulatory variant reporter data (Manzo et al. 2025) | 0.045 pearson-correlation unitless · higher Uncertainty: SE 0.015. Standard error as printed in brackets; its basis is not defined in the caption Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGena LM bigbird on HeLa reporter variant effects regulatory-variant-20261009-protocol-manzo2025-hela-pearson Aggregation: Not reported Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants · Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' |
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regulatory-variant-20261009-protocol-manzo2025-hela-pearson
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Fine-tuned per cell line for enhancer versus control classification on 1 kb sequences (Table 2); variant effect is the log2 ratio of alternative to reference scores Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation As printed per cell line Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version As published Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs 1 kb reference and alternative sequences centred on the SNP Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Pearson correlation of predicted and measured log2 fold-change Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population 5241 SNPs Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id regulatory-variant-20261009-protocol-manzo2025-hela-pearson Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split Per cell line Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin independent_paper Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'Gena LM bigbird', column 'Hela (5241 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-10-6e93f504adfc · Record review: source checked
Stable ID: regulatory-variant-20261009-eval-manzo2025-hela-gena-lm-bigbird